Pairwise Alignments

Query, 541 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 630 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  199 bits (505), Expect = 3e-55
 Identities = 136/406 (33%), Positives = 217/406 (53%), Gaps = 15/406 (3%)

Query: 141 TWTQKQADGSIEEKLSIARKTPHWGWVVGTGIGFNEVNARFWSTAQWQLSLCVVIAVAIL 200
           T  +++ DG  E +L      P   W +   +  +E+ ++  + A W  ++   + V I 
Sbjct: 233 TLEERELDG--ETQLIYVAAVPSTDWELVFVMNKDEIMSQATTLAWWMSAVGAGLLV-IF 289

Query: 201 SLLLVAIRKILLIIGGEPNEVRSAVQAVAQGRIRREFVIKAPKESIYGAVQQMSSS---- 256
            L+LVAI KI      +   V  A+  +A+G    +  ++    + +  +  ++S     
Sbjct: 290 GLVLVAIFKIQF---KDLERVALALNDIAEGD--GDLTVRIHTANSHDEIGILASGFNRF 344

Query: 257 ---LADLVAKLEQSMVALRSELAGAGTRAKSIAELTDSQQQSTAMIATAMTEMASSANQV 313
              L  +++++ +    L  +  G+   A   ++    QQ    M+ATA+TEMAS+  ++
Sbjct: 345 VERLHGMISRMHKIAGQLEYQAQGSSASATDNSQRIAVQQDEVTMVATAVTEMASATEEI 404

Query: 314 ADSARDTAFNTDQADQQSQHTQKLIHNTVSNIQGLATQLQTASTAVADLDLDVKNIAKVL 373
           A +A  TA     A   S H QK +  +  +I+ LA +++TA   +++L+   + I  +L
Sbjct: 405 ASNAEHTAQTAQDAVGLSNHGQKQVMQSQQSIRNLANEVETAGRIISELNEHSQKINSIL 464

Query: 374 DVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAGRTQTSTKEIQQMIHNLQ 433
             I  IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR L+ RT +ST+EIQ MI  LQ
Sbjct: 465 LTISGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHSSTQEIQAMIETLQ 524

Query: 434 EGSRNAIQTIQICGQTSQSSVQESENAASALALIVSALESVSSMSHQIATAAAEQTQVSD 493
           + +  A++++      +++SV ++ +A+ +L  I  A+  +S M+ QIATAA EQT V+ 
Sbjct: 525 QTAGKAVKSMTQSHDMAETSVADANSASESLLQISKAINEISDMASQIATAAEEQTSVTS 584

Query: 494 DIARRINMIEESGSKLSRVVMESHNSTQTLTKLARELEQWAAHFEV 539
           +I R    I E    LS     S    Q L  LA  L+Q    F++
Sbjct: 585 EINRNTESIREVSENLSIEAQSSMVQAQELAHLAASLQQEVGRFKL 630