Pairwise Alignments

Query, 787 a.a., LPS assembly protein LptD from Vibrio cholerae E7946 ATCC 55056

Subject, 773 a.a., organic solvent tolerance protein (RefSeq) from Shewanella loihica PV-4

 Score =  456 bits (1174), Expect = e-132
 Identities = 271/777 (34%), Positives = 409/777 (52%), Gaps = 44/777 (5%)

Query: 33  DDNRAQLPNGEQCLVNQPEPTNPGQ--------QPINVEADKLEAINGQKATYSGNVVVV 84
           D++      G QCLV  P P             Q I + +D   A  G KA++ G+V   
Sbjct: 19  DESETTPAPGAQCLVLPPVPIPEPSADERPLDLQQIKIVSDSSAAKMGDKASFQGDVTFS 78

Query: 85  QGKKRIAADNVTLHQQENVVVAEGNVQFSDGEIKTHSTKATNHLNTDEMTLENTRYQFLC 144
           QG + IAAD+  L Q    + A GN+ F D      +   +  + ++   L+  +Y    
Sbjct: 79  QGGRHIAADSAVLDQANERLDANGNLVFQDNMFTVTADSLSAEMRSNSAQLKGAQYWLHG 138

Query: 145 EPGRGEAVYVSKTGKAVYEIEDGSITSCPDGDNAWRMRASSIDVDQNEEIATFYNPRLEV 204
           +   GEA  +  T      + + + T+CP GD++W + A +I +D +EE    ++ +L++
Sbjct: 139 QQIHGEAENLEITQDNNLHLSNTNFTTCPPGDSSWLLEAETIKIDSSEEWGELWDAKLKI 198

Query: 205 QNVPVFYLPYLTVPIGDTRKTGFLYPTASYGSRNGYSFEVPIYWNLAPQYDLETTFNYMQ 264
            +VPVFYLPY+T+P+ + RK+GFL+P  S  + NG     P YWN+AP+YDL  T +YM 
Sbjct: 199 GDVPVFYLPYMTIPVSEKRKSGFLFPYFSTSTTNGVEVATPYYWNIAPEYDLTFTPHYMS 258

Query: 265 KRGTQLNSVFRYLT-DFGAGQIKSEYLADDQLHTELGDRWAFQYEHNGIFQQAWKFEIDY 323
            RG  L S FRYL  +   GQ+  EYL++D L     DR+ + +EH G     W+   ++
Sbjct: 259 ARGLFLKSEFRYLAGEAQQGQLNVEYLSNDDLVPNRADRYLYHWEHQGAIADNWRVLANF 318

Query: 324 SKVSDINYFSDLDSGVGNREDGQLIQEGRATYRSDNWDSALLVRDFQLLTKDTTSTNLPY 383
           + VSD NYF+DL S V    D QL + G   Y  DNWD +  V+D ++L ++ +    PY
Sbjct: 319 TDVSDNNYFNDLPSDVLRATDNQLSRIGEIAYFEDNWDMSARVQDIKVLGEEES----PY 374

Query: 384 RLMPQLSYNYYAPETMKYLDLDLVSHVSRFETDARGKPSATRVHIEPGLKIPFSNTWGNW 443
           ++MPQ+ +NY AP   + LD +L+   S F        +A+R+H EP + +P     G+ 
Sbjct: 375 QVMPQIGFNYRAPGFWQGLDFNLMGEASNFRHKEDQYATASRLHFEPSVSLPIHGPAGSL 434

Query: 444 TTEARVLGTYYQQDLDKTTDAK-LEESVTRVIPEIRSVAGIVLERDTVLLD-DYTQTLEP 501
           T+E ++L T Y QD    T  + L+ SV+R +P++R    I  ER T   D +Y QTLEP
Sbjct: 435 TSELKLLQTNYWQDTKNYTGTQPLDSSVSRTLPQVRIHGQINFERFTDYFDANYRQTLEP 494

Query: 502 KIQYLYVPEKYQDNIGLYDSTLLQTDYYGLFRSRKYSGVDRIESANQVSYGASTRFFDSN 561
           + QYLYV  + Q NIG+YD+ LLQ DYYGLFR R++SG+DRI  ANQ++ G +TR FD +
Sbjct: 495 QFQYLYVGYEDQSNIGIYDTALLQEDYYGLFRDRRFSGLDRIADANQMTLGLTTRLFDDH 554

Query: 562 YKERLNIAFGQIFYL-DSKL---NPSNKNPDSTSDKTSYSAWAVEMDFNFADYLFYHGGI 617
             ER   + GQI+Y  DSK+   +PS  N     + TS S  A E++       F  G I
Sbjct: 555 NLERFKFSLGQIYYFEDSKVGITDPSRPNEIFKQENTSNSVLAAELNTQLYSDWFLSGAI 614

Query: 618 QYDIDSQAVQLGNSTLEYRV-ASGYIQANYRYVAKDYIRNTVGDSITNIDDITRDGISQA 676
           QYD  ++  +    TL++R   +  +Q +YRYV  D + +   +S+          +SQ 
Sbjct: 615 QYDTKNRNNKKSEVTLDFRPGVNKLLQLSYRYV-PDLVNSNTNESV---------NVSQT 664

Query: 677 GILAGYQLSRKWSASGQYYYDLTTDEALEWLANLTYTSDCWYVGFTYSNQLKSWNGNFVT 736
           G+   + ++  W   G +YYDL    ++E      Y S CW V  +Y  ++K+   N+V 
Sbjct: 665 GLRTAWPINDNWYIVGNWYYDLNEKRSVETYTGFQYESCCWAVRLSYHYRIKT---NYVD 721

Query: 737 DPYAT----PIYENNFSFNIGIIGFGTSIGAGSSMTGVDSAGNS--LGYGRPFFLNN 787
           +   T     ++E+ F  N  I G G     GS   GV    N     Y +P +L N
Sbjct: 722 NLDPTFNDRELFESGFYLNFVIKGLG-----GSGPLGVSDMLNDGLFNYRKPLYLKN 773