Pairwise Alignments

Query, 787 a.a., LPS assembly protein LptD from Vibrio cholerae E7946 ATCC 55056

Subject, 765 a.a., organic solvent tolerance protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  422 bits (1086), Expect = e-122
 Identities = 255/766 (33%), Positives = 404/766 (52%), Gaps = 44/766 (5%)

Query: 41  NGEQCLVNQPEP---TNPG-----QQPINVEADKLEAINGQKATYSGNVVVVQGKKRIAA 92
           +  QCL+  P P   + PG     Q  I + +D+ +A  G++A ++G+VV  QG + IAA
Sbjct: 25  SASQCLIEPPVPRIVSQPGLSAADQAKIRIASDRSKAEMGKQAIFTGDVVFSQGDRHIAA 84

Query: 93  DNVTLHQQENVVVAEGNVQFSDGEIKTHSTKATNHLNTDEMTLENTRYQFLCEPGRGEAV 152
           D   L Q      A GN+ F D      +      + ++  TL   +Y    +   G+A 
Sbjct: 85  DEAILDQATEQFDANGNLVFQDSNFTVTADSLQAQMRSNRATLTGAQYWLHGQQVHGDAE 144

Query: 153 YVSKTGKAVYEIEDGSITSCPDGDNAWRMRASSIDVDQNEEIATFYNPRLEVQNVPVFYL 212
            +  T      + + + T+CP  + +W + A  I ++  EE    +N +L V ++PVFY+
Sbjct: 145 KLQITINNNLILTNTNFTTCPPDNVSWLLEAEKIKINSEEEWGEIWNAKLRVADIPVFYI 204

Query: 213 PYLTVPIGDTRKTGFLYPTASYGSRNGYSFEVPIYWNLAPQYDLETTFNYMQKRGTQLNS 272
           PY+TVP+ D RKTGFLYP+ S  + NG+    P YWN+AP+YDL  T NYM  RG    +
Sbjct: 205 PYMTVPVSDKRKTGFLYPSFSTSTTNGFEVSAPYYWNIAPEYDLTFTPNYMTNRGLFTKT 264

Query: 273 VFRYLT-DFGAGQIKSEYLADDQLHTELGDRWAFQYEHNGIFQQAWKFEIDYSKVSDINY 331
            FRYL  +   G++  EYL  DQ+     +R+ + ++H G   + W+   ++++VSD NY
Sbjct: 265 EFRYLAGEAQNGRLNLEYLGSDQMLNGSPNRYLYNWQHQGAIDKNWRVLANFTEVSDNNY 324

Query: 332 FSDLDSGVGNREDGQLIQEGRATYRSDNWDSALLVRDFQLLTKDTTSTNLPYRLMPQLSY 391
           F+DL S V    D QL + G  +Y   +WD +  V+D ++L +D      PY++MPQ+++
Sbjct: 325 FNDLKSDVNRATDNQLSRIGEVSYFERDWDISTRVQDIKVLGED----EKPYQVMPQVNF 380

Query: 392 NYYAPETMKYLDLDLVSHVSRFETDARGKPSATRVHIEPGLKIPFSNTWGNWTTEARVLG 451
           NY A +    LD    S ++ F        +ATR+H+ P L +P     G++T++ +++ 
Sbjct: 381 NYRAADFWNNLDFGFNSELTNFAHQDDDVNTATRLHMAPSLTLPIHGPSGSFTSQLKLMQ 440

Query: 452 TYYQQDLDKTTDAKLEESVTRVIPEIRSVAGIVLERDTVLLD-DYTQTLEPKIQYLYVPE 510
           T Y Q+ + +    L+++V+R IP++R    I  ER T L + +Y QTLEP+ QYLYV  
Sbjct: 441 TNYWQEKNNSKFDSLDDTVSRTIPQVRINGQINFERFTELFEHNYRQTLEPQFQYLYVGY 500

Query: 511 KYQDNIGLYDSTLLQTDYYGLFRSRKYSGVDRIESANQVSYGASTRFFDSNYKERLNIAF 570
           + Q  IG+YD+  LQ DY+GLFR R++SG+DRI  ANQV+ G +TR FD + +E    + 
Sbjct: 501 EDQRGIGIYDTAQLQDDYFGLFRDRRFSGLDRIADANQVTLGITTRLFDDHNQEATKFSL 560

Query: 571 GQIFYL-DSKLNPSNKNPDSTSDKTSYSAWAVEMDFNFADYLFYHGGIQYDIDSQAVQLG 629
           GQIFYL DSKL   +   +      S S  A E+D   +   +    IQYD ++   +  
Sbjct: 561 GQIFYLQDSKLGYED---NIFEQNQSTSVLAAELDTRLSSNWYLGAAIQYDTNTSDNKKT 617

Query: 630 NSTLEYR-VASGYIQANYRYVAKDYIRNTVGDSITNIDDITRDGISQAGILAGYQLSRKW 688
             TL++R  A+  +Q +YRYV  D + +   D +          ISQAG+   + ++   
Sbjct: 618 EVTLDFRPEANKLLQFSYRYV-PDLLNSNTNDLV---------NISQAGVRGAWPINDSL 667

Query: 689 SASGQYYYDLTTDEALEWLANLTYTSDCWYVGFTYSNQLKSWNGNFVTDPYATPI----- 743
              G +YYDL    ++E    + Y S C+ +  +Y  ++K+   N+  +  +T I     
Sbjct: 668 YFVGNWYYDLNETRSIETYTGVQYESCCYAIRLSYHYRIKT---NYDDNIGSTIIDEREQ 724

Query: 744 YENNFSFNIGIIGFGTSIGAGSSMTGVDSAGNS--LGYGRPFFLNN 787
           +E+    N+ I G G     GS   GV    N     Y +P +L N
Sbjct: 725 FESGVYLNLIIKGLG-----GSGPLGVSDMLNDGLFNYRKPLYLRN 765