Pairwise Alignments

Query, 787 a.a., LPS assembly protein LptD from Vibrio cholerae E7946 ATCC 55056

Subject, 780 a.a., LPS assembly protein LptD from Klebsiella michiganensis M5al

 Score =  503 bits (1295), Expect = e-146
 Identities = 285/777 (36%), Positives = 431/777 (55%), Gaps = 40/777 (5%)

Query: 11  TFLAASISAALFAPQIQAEASVDDNRAQLPNGEQCLVNQPEPTNPGQQPINVEADKLEAI 70
           + LA  I++AL++ Q  A          +P+  + LV       P   P+ ++AD  +  
Sbjct: 7   SLLATMIASALYSQQGLAADLATQCMLGVPSYNRPLVEG----KPNDLPVTIDADHAKGN 62

Query: 71  NGQKATYSGNVVVVQGKKRIAADNVTLHQQE--------NVVVAEGNVQFSDGEIKTHST 122
               A ++GNV + QG  R+ AD V LHQQ+          V A GNV + D ++     
Sbjct: 63  YPDNAVFTGNVDINQGNSRLQADEVQLHQQQADGQPQPVRTVDALGNVHYDDNQVILKGP 122

Query: 123 KATNHLNTDEMTLENTRYQFLCEPGRGEAVYVSKTGKAVYEI-EDGSITSCPDGDNAWRM 181
           KA ++LNT +  +    YQ +   GRG A  + + G+  Y I E+GS TSC  G + W +
Sbjct: 123 KAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSV 182

Query: 182 RASSIDVDQNEEIATFYNPRLEVQNVPVFYLPYLTVPIGDTRKTGFLYPTASYGSRNGYS 241
             S +  D+ E++A  +N R ++ +VP+FY PYL +P+GD R++GFL P A Y ++NG  
Sbjct: 183 VGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGAE 242

Query: 242 FEVPIYWNLAPQYDLETTFNYMQKRGTQL-NSVFRYLTDFGAGQIKSEYLADDQLHTE-- 298
           F +P YWN+AP +D   T +YM KRG  +  + FRYLT  G G I+ +YL  D+++ +  
Sbjct: 243 FYLPYYWNIAPNFDATLTPHYMSKRGGVMWENEFRYLTKAGTGLIEFDYLPSDKIYQDDH 302

Query: 299 LGD----RWAFQYEHNGIFQQAWKFEIDYSKVSDINYFSDLDSGVGNREDGQLIQEGRAT 354
            GD    RW F + H+G+  Q W+F  DY+KVSD +YF+D  S  G+  DG   Q+  A 
Sbjct: 303 SGDSNSRRWLFYWNHSGVVDQVWRFNADYTKVSDPDYFNDFSSKYGSSTDGYATQKLSAG 362

Query: 355 YRSDNWDSALLVRDFQLLTKDTTSTNLPYRLMPQLSYNYYAPETMKYLDLDLVSHVSRFE 414
           Y + N+D+ +  + FQ+  +D+++    Y   PQL  NYY  +   + D  L      F 
Sbjct: 363 YANQNFDATVSTKQFQVFNRDSSNA---YSAEPQLDVNYYQNDVGPF-DTHLYGQAVHFV 418

Query: 415 TDARGKPSATRVHIEPGLKIPFSNTWGNWTTEARVLGTYYQQ----DLDKTTDAKLEESV 470
                 P ATRVH EP + +P SN WG+  TEA++L T+YQQ    D +       ++SV
Sbjct: 419 NSNSRMPEATRVHFEPTINLPLSNGWGSINTEAKLLATHYQQSNLDDYNAANGTDYKDSV 478

Query: 471 TRVIPEIRSVAGIVLERDTVLLDDYTQTLEPKIQYLYVPEKYQDNIGLYDSTLLQTDYYG 530
            RV+P+ +    +V ERD  + ++YTQTLEP++QYLY+P + Q  IG YDSTLLQ+DY G
Sbjct: 479 NRVMPQFKVDGKMVFERD--MQENYTQTLEPRMQYLYIPYRDQSKIGTYDSTLLQSDYSG 536

Query: 531 LFRSRKYSGVDRIESANQVSYGASTRFFDSNYKERLNIAFGQIFYL-DSKLNPSNKNPDS 589
           LFR R YSG+DRI SANQVS G ++R +D+   ER NI+ GQI+Y  +++    N N ++
Sbjct: 537 LFRDRSYSGLDRIASANQVSTGITSRVYDAAAVERFNISVGQIYYFTEARTGDDNINWEN 596

Query: 590 TSDKTSYSAWAVEMDFNFADYLFYHGGIQYDIDSQAVQLGNSTLEY-RVASGYIQANYRY 648
              + S   WA +  +   D     GGIQYD     V  G+ T+EY R  +  +Q NYRY
Sbjct: 597 NDTRGSL-VWAGDTYWRITDDWGLRGGIQYDTRLDNVATGSGTVEYRRDENRLVQLNYRY 655

Query: 649 VAKDYIRNTVGDSITNIDDITRDGISQAGILAGYQLSRKWSASGQYYYDLTTDEALEWLA 708
            + +YI+ T+    T      +DGISQ G+ A + +  +W+  G YYYD  T ++   + 
Sbjct: 656 ASPEYIQATLPSYSTAKQ--YKDGISQVGMTASWPIVDRWAVVGAYYYDTNTRKSANQML 713

Query: 709 NLTYTSDCWYVGFTYSNQLKSWNGNFVTDPYATPIYENNFSFNIGIIGFGTSIGAGS 765
            + Y+S C+ +   Y  ++  W+ +      +   Y+N F FNI + G  ++ G G+
Sbjct: 714 GVQYSSCCYAIRVGYERKINGWDNS-----SSESKYDNTFGFNIELRGLSSNYGLGT 765