Pairwise Alignments

Query, 787 a.a., LPS assembly protein LptD from Vibrio cholerae E7946 ATCC 55056

Subject, 765 a.a., organic solvent tolerance protein (RefSeq) from Shewanella sp. ANA-3

 Score =  426 bits (1094), Expect = e-123
 Identities = 264/796 (33%), Positives = 416/796 (52%), Gaps = 52/796 (6%)

Query: 10  RTFLAASISAALFAPQIQAEASVDDNRAQLPNGEQCLVNQPEP---TNPG-----QQPIN 61
           R FLA S+      PQ+     V  + +   +  QC++  P P   + PG     Q+ I 
Sbjct: 4   RYFLALSL-----LPQV-----VLADESPTASASQCVIEPPVPRIVSQPGLSAADQEKIR 53

Query: 62  VEADKLEAINGQKATYSGNVVVVQGKKRIAADNVTLHQQENVVVAEGNVQFSDGEIKTHS 121
           + +D+  A  G++A ++G+VV  QG + IAAD   L Q      A GN+ F D      +
Sbjct: 54  IVSDRSNAEMGKQAIFTGDVVFSQGDRHIAADEAILDQATEQFDANGNLVFQDSIFTVTA 113

Query: 122 TKATNHLNTDEMTLENTRYQFLCEPGRGEAVYVSKTGKAVYEIEDGSITSCPDGDNAWRM 181
                 + ++  TL+  +Y    +   G+A  +  T      + + + T+CP  + +W +
Sbjct: 114 DSLQAQMRSNRATLKGAQYWLHGQQVHGDAEKLQITMNNNLILTNTNFTTCPPDNVSWLL 173

Query: 182 RASSIDVDQNEEIATFYNPRLEVQNVPVFYLPYLTVPIGDTRKTGFLYPTASYGSRNGYS 241
            A  I ++  EE    +N +L V ++PVFY+PY+TVP+ D RKTGFLYP+ S  + NG+ 
Sbjct: 174 EAEKIKINSEEEWGEIWNAKLRVADIPVFYIPYMTVPVSDKRKTGFLYPSFSTSTTNGFE 233

Query: 242 FEVPIYWNLAPQYDLETTFNYMQKRGTQLNSVFRYLT-DFGAGQIKSEYLADDQLHTELG 300
              P YWN+AP+YDL  T NYM  RG    + FRYL  +  +G++  EYL +DQ+ +   
Sbjct: 234 VSAPYYWNIAPEYDLTFTPNYMSSRGLFTKTEFRYLAGEAQSGRLNLEYLGNDQMISGSP 293

Query: 301 DRWAFQYEHNGIFQQAWKFEIDYSKVSDINYFSDLDSGVGNREDGQLIQEGRATYRSDNW 360
           +R+ + ++H G   + W+   ++++VSD NYF+DL S V    D QL + G  +Y   +W
Sbjct: 294 NRYLYNWQHQGAIDKNWRVLANFTEVSDNNYFNDLKSDVNRATDNQLSRIGEVSYFERDW 353

Query: 361 DSALLVRDFQLLTKDTTSTNLPYRLMPQLSYNYYAPETMKYLDLDLVSHVSRFETDARGK 420
           D +  V+D ++L +D      PY++MPQ+++NY A +    LD    S ++ F       
Sbjct: 354 DISTRVQDIKVLGED----EKPYQVMPQVNFNYRAADFWNNLDFGFNSELTNFAHQDSDM 409

Query: 421 PSATRVHIEPGLKIPFSNTWGNWTTEARVLGTYYQQDLDKTTDAKLEESVTRVIPEIRSV 480
            +ATR+H+ P L +P     G+ T++ +++ T Y Q+ + +    L+++V+R IP++R  
Sbjct: 410 NTATRLHMAPSLTLPIHGPSGSLTSQVKLMQTNYWQEKNNSGFDGLDDTVSRTIPQVRIN 469

Query: 481 AGIVLERDTVLLD-DYTQTLEPKIQYLYVPEKYQDNIGLYDSTLLQTDYYGLFRSRKYSG 539
             I  ER T L D +Y QTLEP+ QYLYV  + Q  IG+YD+  LQ DY+GLFR R++SG
Sbjct: 470 GQINFERFTELFDQNYRQTLEPQFQYLYVGYEDQRGIGIYDTAQLQDDYFGLFRDRRFSG 529

Query: 540 VDRIESANQVSYGASTRFFDSNYKERLNIAFGQIFYL-DSKLNPSNKNPDSTSDKTSYSA 598
           +DRI  ANQV+ G +TRFFD + +E    + GQI YL DSKL   +   +      S S 
Sbjct: 530 LDRIADANQVTLGVTTRFFDDHNQEATKFSLGQILYLQDSKLGYED---NLFEQNQSTSV 586

Query: 599 WAVEMDFNFADYLFYHGGIQYDIDSQAVQLGNSTLEYR-VASGYIQANYRYVAKDYIRNT 657
            A E+D   +   +    IQYD +S   +    TL++R  A+  +Q +YRYV  D + + 
Sbjct: 587 LAAELDTRLSHDWYLGAAIQYDTNSSDNKKTEVTLDFRPEANKLLQLSYRYV-PDLLNSN 645

Query: 658 VGDSITNIDDITRDGISQAGILAGYQLSRKWSASGQYYYDLTTDEALEWLANLTYTSDCW 717
             D +          ISQAG+   + ++      G +YYDL    ++E      Y S C+
Sbjct: 646 TNDLV---------NISQAGVRGAWPINDSLYFVGNWYYDLNESRSIETYTGFQYESCCY 696

Query: 718 YVGFTYSNQLKSWN----GNFVTDPYATPIYENNFSFNIGIIGFGTSIGAGSSMTGVDSA 773
            +  +Y  ++K+      G+ V D      +E+    N+ I G G     GS   GV   
Sbjct: 697 AIRLSYHYRIKTNYDDNIGSAVIDEREQ--FESGVYLNLVIKGLG-----GSGPLGVSDM 749

Query: 774 GNS--LGYGRPFFLNN 787
            N     Y +P +L N
Sbjct: 750 LNDGLFNYRKPLYLRN 765