Pairwise Alignments

Query, 271 a.a., ribosomal RNA small subunit methyltransferase A from Vibrio cholerae E7946 ATCC 55056

Subject, 284 a.a., 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA from Synechocystis sp000284455 PCC 6803

 Score =  161 bits (407), Expect = 2e-44
 Identities = 107/282 (37%), Positives = 153/282 (54%), Gaps = 30/282 (10%)

Query: 7   LGHKARKRFGQNFLNDPYIIDGIVSAINPKPG--------QNLVEIGPGLGAITEPVGRE 58
           +  + RKRFGQ++LN    +  IV+A + + G          L+EIGPG+G +T+ +   
Sbjct: 1   MAFRPRKRFGQHWLNHEPTLQAIVAAADIQSGAPQSGSLRDRLLEIGPGMGVLTKQLLAT 60

Query: 59  VDKFTVIELDRDLAERLRNHPELASKLTIHEGDAMRFDFKQLVK------PNNKLRVFGN 112
            +    +ELDRDL  +LR          + EGD +  D   L++      P NK  V  N
Sbjct: 61  GNPVVAVELDRDLCLKLRKKLGQRENFLLLEGDVLILDLNALLQDFPQFSPLNK--VVAN 118

Query: 113 LPYNISTPLMFHLFEFHRD-----IQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYC 167
           +PYNI++P++  L    +       + +  ++QKE+  RL A P TKAYG L+V  QY  
Sbjct: 119 IPYNITSPILELLLGTIQKPRVPGFETIVLLVQKEIAERLTAQPSTKAYGALSVRMQYLA 178

Query: 168 KVVPVLEVPPSAFVPPPKVDSAVVRLVPY--EDLPHPATSLEWLDRVVREGFNQRRKTVR 225
           +V  +++VPP AF PPPKVDSAV+RL PY  E LP        LD+++  GF  RRK +R
Sbjct: 179 RVDWIVDVPPKAFTPPPKVDSAVIRLTPYPVEQLP---GDRRLLDQLLCLGFANRRKMLR 235

Query: 226 NCYKGLAEPE----TLETLGINPGMRPENLTLAQFVALANWL 263
           N  KGL  PE     LE L +    R E+L+L Q++ L N L
Sbjct: 236 NNLKGLIAPEQLTTLLEQLALPSTARAEDLSLEQWLELTNLL 277