Pairwise Alignments

Query, 271 a.a., ribosomal RNA small subunit methyltransferase A from Vibrio cholerae E7946 ATCC 55056

Subject, 279 a.a., dimethyladenosine transferase from Synechococcus elongatus PCC 7942

 Score =  152 bits (383), Expect = 1e-41
 Identities = 93/262 (35%), Positives = 140/262 (53%), Gaps = 14/262 (5%)

Query: 11  ARKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEPVGREVDKFTVIELDRD 70
           ARKRFGQ++L    I+D IV+A   +P   ++EIGPG GA+T+ +   VD    +ELDRD
Sbjct: 3   ARKRFGQHWLRSEAILDRIVAAAELRPSDRVLEIGPGRGALTQRLLAAVDGLVAVELDRD 62

Query: 71  LAERLRNHPELASKLTIHEGDAMRFDFKQLVKPN----NKLRVFGNLPYNISTPLMFHLF 126
           L  +L+     A    + EGD ++ D+   +       N  +V  N+PYNI+ P++  L 
Sbjct: 63  LIGQLQQRFGQAENFCLLEGDILQLDWTAAIADRPRFANPSKVVANIPYNITGPILQSLL 122

Query: 127 -----EFHRDIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVVPVLEVPPSAFV 181
                      + +  ++Q+EV +RL A PG +AYG L+V  QY      V  VPP +F 
Sbjct: 123 GTIAQPRRPAFERLVLLVQQEVADRLCATPGQRAYGALSVRVQYLASCERVCAVPPKSFS 182

Query: 182 PPPKVDSAVVRLVPYEDLPHPATSLEWLDRVVREGFNQRRKTVRNCYKGLAEPETLETL- 240
           PPPKV S V+ L P    P    +   L++++ +GF+ +RK +RN  K L   E +E   
Sbjct: 183 PPPKVQSTVICLKP-RPWPQVCNNPGRLEKLLNQGFSAKRKMLRNNLKSLYSSEQIEAAF 241

Query: 241 ---GINPGMRPENLTLAQFVAL 259
               I P  R E L++ Q++ L
Sbjct: 242 AAHQIAPEARAETLSIDQWIGL 263