Pairwise Alignments

Query, 271 a.a., ribosomal RNA small subunit methyltransferase A from Vibrio cholerae E7946 ATCC 55056

Subject, 267 a.a., 16S ribosomal RNA methyltransferase A from Methanococcus maripaludis S2

 Score =  106 bits (265), Expect = 5e-28
 Identities = 70/213 (32%), Positives = 103/213 (48%), Gaps = 7/213 (3%)

Query: 13  KRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEPVGREVDKFTVIELDRDLA 72
           K+ GQ FL D   +   ++         ++E+G G GA+T+ + +   K  VIELD  L 
Sbjct: 5   KKLGQCFLKDKNFVKKAINRAEITNNDIVLEVGLGEGALTKELAKIAKKVYVIELDERLK 64

Query: 73  ERLRNHPELASKLTIHEGDAMRFDFKQLVKPNNKLRVFGNLPYNISTPLMFHLFEFHRDI 132
                       + I   DA++ D K L       ++  NLPY IS+P+ F   E   D 
Sbjct: 65  PFADEITAEFENVEIIWSDALKVDLKNL----GFNKIVANLPYQISSPITFKFLE--EDF 118

Query: 133 QDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVVPVLEVPPSAFVPPPKVDSAVVR 192
           +    M Q E   R+A  P TK Y RL+V  QY   V  + +VPPSAF P P V+SA+V+
Sbjct: 119 ETAVLMYQYEFAKRMAGKPDTKEYSRLSVAVQYNADVEFICKVPPSAFSPKPDVNSAIVK 178

Query: 193 LVPYEDLPHPATSLEWLDRVVREGFNQRRKTVR 225
           L   E   H     E+  +V++  F  R +T++
Sbjct: 179 LTKREPKYH-VKDEEFFKKVLKAVFQHRNRTIK 210