Pairwise Alignments

Query, 271 a.a., ribosomal RNA small subunit methyltransferase A from Vibrio cholerae E7946 ATCC 55056

Subject, 267 a.a., 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA from Methanococcus maripaludis JJ

 Score =  107 bits (267), Expect = 3e-28
 Identities = 71/216 (32%), Positives = 104/216 (48%), Gaps = 7/216 (3%)

Query: 10  KARKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEPVGREVDKFTVIELDR 69
           K  K+ GQ FL D   +   ++         ++E+G G GA+T+ + +   K  VIELD 
Sbjct: 2   KKSKKLGQCFLKDKNFVKKAINRAELNDKDIVLEVGLGEGALTKELAKIAKKVYVIELDE 61

Query: 70  DLAERLRNHPELASKLTIHEGDAMRFDFKQLVKPNNKLRVFGNLPYNISTPLMFHLFEFH 129
            L             + I   DA++ D K +       ++  NLPY IS+P+ F   E  
Sbjct: 62  RLKPFADEITAEFENVEIIWSDALKVDLKSI----EFNKIVANLPYQISSPITFKFLE-- 115

Query: 130 RDIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVVPVLEVPPSAFVPPPKVDSA 189
            D +    M Q E   R+A  P TK Y RL+V  QY   V  + +VPPSAF P P V+SA
Sbjct: 116 EDFETAVLMYQYEFAKRMAGKPDTKEYSRLSVAVQYNADVEFICKVPPSAFSPKPDVNSA 175

Query: 190 VVRLVPYEDLPHPATSLEWLDRVVREGFNQRRKTVR 225
           +V+L   E   H     E+  +V++  F  R +TV+
Sbjct: 176 IVKLTKREPKYH-VKDEEFFKKVLKAMFQHRNRTVK 210