Pairwise Alignments

Query, 323 a.a., octaprenyl diphosphate synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 287 a.a., geranylgeranyl diphosphate synthase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  115 bits (287), Expect = 2e-30
 Identities = 72/219 (32%), Positives = 115/219 (52%), Gaps = 11/219 (5%)

Query: 38  YIISGGGKRLRPLLAVLSAKALGYQGSHHTTAAAFIEFIHTATLLHDDV--VDESDLRRG 95
           Y +  GGKRLRP+L + +A   G         AA IE IHT +L+HDD+  +D+ DLRRG
Sbjct: 29  YSLLAGGKRLRPVLCLSTAGMTGLDPMSVMPFAAAIELIHTYSLIHDDLPAMDDDDLRRG 88

Query: 96  KATANAAFGNAASVLVGDFIYTRSFQMMTELGS-------MKILKLMSDAVNVIAEGEVQ 148
           + + +  F  A ++L GD + T +F +M  +G        +  L+ +S A         Q
Sbjct: 89  RPSNHRQFDEATAILAGDGLLTDAFDLMASVGGGIPAGHVLAALREVSSAAGSSGMVGGQ 148

Query: 149 QL-MNCNDPDTTEASYMQVIYS-KTARLFEAATQIGAILCDASPEVELAMQNYGKYLGTA 206
            L M+    D  + + ++ +++ KT  L   +   GA+L  A       +  YG  +G A
Sbjct: 149 ALDMDYTGRDDIDLAALRTMHAMKTGALIRCSCVAGALLGGAPASAVEQVAGYGAAIGAA 208

Query: 207 FQLIDDVMDYTSDGDEMGKNVGDDLAEGKPTLPLLYAMQ 245
           FQ++DD++D T D  ++GK VG D+ +GK T P L  ++
Sbjct: 209 FQIVDDILDETGDEAQLGKPVGSDVEQGKVTYPSLLGIE 247