Pairwise Alignments

Query, 323 a.a., octaprenyl diphosphate synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 293 a.a., farnesyl-diphosphate synthase (RefSeq) from Shewanella sp. ANA-3

 Score =  104 bits (259), Expect = 3e-27
 Identities = 69/242 (28%), Positives = 119/242 (49%), Gaps = 12/242 (4%)

Query: 43  GGKRLRPLLAVLSAKALGYQGSHHTTAAAFIEFIHTATLLHDDV--VDESDLRRGKATAN 100
           GGKR+RP L     +  G        +AA IE IH  +L+HDD+  +D+ DLRRG+ T +
Sbjct: 42  GGKRIRPFLVYSVGQMFGVPLEKLDASAAAIECIHAYSLIHDDLPAMDDDDLRRGQPTVH 101

Query: 101 AAFGNAASVLVGDFIYTRSFQMMTE----LGSMKILKLM-----SDAVNVIAEGEVQQLM 151
            AF  A ++L GD + T +F+++TE    + S + + ++     +     +  G+   L 
Sbjct: 102 IAFDEATAILAGDALQTLAFEIVTEAVPGISSEQHIAMVRALAKASGYRGMCGGQAIDLA 161

Query: 152 NCNDPDTTEASYMQVIYSKTARLFEAATQIGAILCDASPEVELAMQNYGKYLGTAFQLID 211
           + +     +A   Q+   KT  L   A ++  I  +A  +    M  +   +G AFQ+ D
Sbjct: 162 STDKLIDLKA-LTQLHNMKTGALISCAVELALIAANAPKDEYQTMMEFAHAVGLAFQVQD 220

Query: 212 DVMDYTSDGDEMGKNVGDDLAEGKPTLPLLYAMQHGNPEQAAMIREAIEKANGMSRLNEI 271
           D++D  +  +E+GK  G D    K T P L  +Q      A +I+EA+     +   +++
Sbjct: 221 DILDIIATTEELGKPQGSDAESNKSTFPQLLGLQGAKDTAAQLIQEALSALAKLPYNSQL 280

Query: 272 LA 273
           +A
Sbjct: 281 IA 282