Pairwise Alignments

Query, 328 a.a., C4-dicarboxylate ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 350 a.a., TRAP transporter solute receptor, TAXI family (NCBI) from Rhodospirillum rubrum S1H

 Score =  164 bits (416), Expect = 2e-45
 Identities = 106/349 (30%), Positives = 174/349 (49%), Gaps = 32/349 (9%)

Query: 2   KEGKFMSLPKIIKM-----GAIAAAVIGSGVASAQDFITIGTGSVTGVYYPTGGAICKLV 56
           + G F  +P+++ M     G +A AV+    A    F+ IGTG  +G Y+P GG I  L+
Sbjct: 3   RRGLFALVPQVLGMAVGMAGMVAPAVVRPSKAQELRFLRIGTGRTSGAYFPVGGLIASLI 62

Query: 57  NKDRKDHNIR----CSV-------ESTGGSIYNVNTIRSGELDFGIVQSDWQYHGYN--- 102
           +             C V       +STGGS+ N+  ++SG+LD  I Q+D  Y  Y+   
Sbjct: 63  SNPPGSRPCEKGGSCGVPGLIAVAQSTGGSVDNIVGLQSGQLDLAICQADVAYDAYSRTD 122

Query: 103 --GTSEFAEQGPYKKLRAVFSMHTEPFNIIARADSGIENVKDLAGKRVNIGNPGSGDRAT 160
             G  +FAE      LRAV S++ E  +++AR DSGI  + DL GKRV +G+P SG   +
Sbjct: 123 AKGVPDFAE------LRAVASLYKESLHLVARVDSGISTLADLRGKRVGLGDPASGTLVS 176

Query: 161 MQVVMDAFGWNNDSFKLAAELKGSERSQALCDNKIDAFIYMVGHPNGAIKEATTSCAAKL 220
           +++++ A G    + K   +   S  +  + D ++DAF +  G P   I          +
Sbjct: 177 VRLLLSALGLGEKAVKADYD-PPSAAADKVADGRLDAFFFFGGEPVALITSLRERAEVTV 235

Query: 221 VPATGPEIEKIVANNPYYAYSVVPAGMYSGTDQEVKSFGVAATLVTTEEVSEAVVYNLTK 280
           VP  GP +E + A +P+    ++    Y      + +  VAA LVT  ++ +A++  +T 
Sbjct: 236 VPVDGPAVEDLAARSPFLTLGLIRQQAYD-NPLPIVTLQVAAVLVTRADMDDALIEAITA 294

Query: 281 AVF--ENFDTFTRLHPAFANLKKEDMVTAGNSIPLHPGAVKYYKEAGLI 327
           A++  +    F +  P          V  G ++PLHPGA++YY++ G+I
Sbjct: 295 ALWHRQTKILFEKGPPQITQATLGQAV-QGIAVPLHPGAMRYYRKEGII 342