Pairwise Alignments

Query, 328 a.a., C4-dicarboxylate ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 319 a.a., TRAP transporter solute receptor, TAXI family (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 77.4 bits (189), Expect = 4e-19
 Identities = 80/332 (24%), Positives = 143/332 (43%), Gaps = 39/332 (11%)

Query: 9   LPKIIKMGAIAAAVIGSGVASAQDFITIGTGSVTGVYYPTGGAICKLVNKDRKDHNIRCS 68
           L   +   A+AA  +G+  A A+  IT  +      YY     I + + K   D  I  +
Sbjct: 4   LKPFVVAAAVAACAMGTA-AGAETRITYKSAKAGSSYYQMAVQISEAM-KAGTDGAISVT 61

Query: 69  VESTGGSIYNVNTIRSGELDF---------GIVQSDWQYHGYNGTSEFAEQGP--YKKLR 117
           VE + GS+ NV  +R+   D+         G+ Q         G + F  +G   + ++R
Sbjct: 62  VEESQGSVQNVMEVRARGGDYVFTTPPALIGLAQ--------RGAAMFEGKGSPAFDEIR 113

Query: 118 AVFSMHTEPFNIIARADSGIENVKDLAGKRVNIGNPGSGDRATMQVVMDAFGWNNDSFKL 177
           A+F + +   + +    SG+ +  ++ GK + +G+   G R   +  +  FG        
Sbjct: 114 ALFPIPSLTMHFVMSEASGVTSFAEMEGKTILLGSGSFGAREG-EKYLGLFGLEGKVTIA 172

Query: 178 AAELKGSERSQALCDNKIDAFIYMVGHPNGAIKEATTSCAAKLVPATGPEIEKIVANNPY 237
            +EL  S    AL + +ID F+    +P   + EA  S    ++  +  +I +       
Sbjct: 173 DSEL--SNAVNALKNGQIDGFVTAGSYPAPNVIEAAASTGVTVLSLSPEQIAETGRTA-- 228

Query: 238 YAYSVVPAGMYSGTDQEVKSFGVAATLVTTEEVSEAVVYNLTKAVFENFDTFTRLHPAFA 297
                +PAG Y+G + ++ +  +     TT ++ E   Y LTK  +E     T+   A  
Sbjct: 229 ---LTIPAGTYAGQEADIDTTSLPVVAYTTTKMDEETAYQLTKTYWE-----TKADMA-G 279

Query: 298 NLKKEDMVT----AGNSIPLHPGAVKYYKEAG 325
           + K  D V+    +  +  +HPGA++YYKE G
Sbjct: 280 DAKWWDGVSVDMLSNITTQIHPGALRYYKEVG 311