Pairwise Alignments

Query, 328 a.a., C4-dicarboxylate ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 335 a.a., TRAP transporter solute receptor, TAXI family (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  125 bits (315), Expect = 1e-33
 Identities = 92/318 (28%), Positives = 151/318 (47%), Gaps = 11/318 (3%)

Query: 17  AIAAAVIGSGVASAQDFITIGTGSVTGVYYPTGGAICKLVN-KDRKDHNIRCSVESTGGS 75
           AI+ +V     A   ++I + T S  G YYP G A+  LV  K      I  S  S+ GS
Sbjct: 12  AISLSVATGAKAEGANYI-LATASTGGTYYPVGVALSTLVKVKLEPSQKIGMSAISSAGS 70

Query: 76  IYNVNTIRSGELDFGIVQSDWQYHGYNGTSEFAEQGPYKKLRAVFSMHTEPFNIIARADS 135
             NV  IR GE  FGI+Q  + Y+   GT    E G  + LR+V  +     + +  AD+
Sbjct: 71  GENVRLIREGEAQFGIMQGLFGYYAATGTGPLEESGKQENLRSVTMLWQNVEHFVVAADA 130

Query: 136 G----IENVKDLAGKRVNIGNPGSGDRATMQVVMDAFGWNNDS-FKLAAELKGSERSQAL 190
                IE++  L G+ + +G   SG   +   ++ +FG + +S ++L     G   ++AL
Sbjct: 131 APTGTIEDLVALKGEAMALGRQNSGTIGSNATILSSFGVDIESDYELVFGGYGPS-AEAL 189

Query: 191 CDNKIDAFIYMVGHPNGAIKE--ATTSCAAKLVPATGPEIEKIVANNPYYAYSVVPAGMY 248
            + ++       G P GAI +  A    +  L+  T  +  +       +    + AG Y
Sbjct: 190 QNGQVKGIGTPAGVPVGAISQLMAAAGDSVTLLNFTPEQAAQADGGRELWTPYTIAAGTY 249

Query: 249 SGTDQEVKSFGVAATLVTTEEVSEAVVYNLTKAVFENFDTFTRLHPAFANLKKEDMVTAG 308
            G  ++V++      L T+ ++ +  VY +TK ++EN      +HPA   +  E  + AG
Sbjct: 250 PGQAEDVQTIAQPNFLATSADLPDEHVYQITKTIYENLPFLNAIHPATKAMAIESAI-AG 308

Query: 309 NSIPLHPGAVKYYKEAGL 326
             +PLHPGA +YY+E G+
Sbjct: 309 LPLPLHPGAQRYYEEVGI 326