Pairwise Alignments

Query, 854 a.a., DUF3394 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 426 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Pseudomonas fluorescens FW300-N2E2

 Score = 74.3 bits (181), Expect = 1e-17
 Identities = 42/127 (33%), Positives = 66/127 (51%)

Query: 208 FVLFGAMLERAGAGAYFIKVAFSMLGHMRGGPAKAAVVASGLSGLVSGSSIANVVTTGTF 267
           FVL GA++   G     +  A  ++G +RGG +   +VAS   G +SGSS+A+  + G+ 
Sbjct: 61  FVLAGAIMAEGGMSRRLVAFASVLVGFVRGGLSLVNLVASSFFGAISGSSVADTASVGSV 120

Query: 268 TIPLMKRVGFPGTKAGAVEVAASTNGQLTPPIMGAAAFLMVEYVGISYVEVIKAAILPAL 327
            IP M R G+P   A AV V+ S    LTPP   A  + +     +S   +  A I+P +
Sbjct: 121 LIPEMTRRGYPRDYATAVTVSGSVQALLTPPSHNAVLYSLAAGGTVSIGSLFMAGIVPGI 180

Query: 328 ISYIALI 334
           +  + L+
Sbjct: 181 MMNLCLM 187



 Score = 35.8 bits (81), Expect = 5e-06
 Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 25/167 (14%)

Query: 513 MIGIGVATAAAGTVVGVVTLTGIGLVMTDFVEFISGGNLMLMLIFTAVISLILGMGLPTT 572
           MI IG A A+ G ++ ++ +     + T F+       ++LM I   V+ L+LG  +   
Sbjct: 280 MILIGFA-ASFGYIMTLMEIPA--KITTAFLTLSDNRYVILMCI--NVMLLLLGTVMDMA 334

Query: 573 ANYIVVSTLMAPVIVTLGAEHGLIIPLIAVHLFVFYFGILADDTPPVGLAAFAAAAIAKS 632
              ++++ ++ PVIV +G +      ++ V+L +   G++   TPPVG   F  +AI K 
Sbjct: 335 PLILILTPILMPVIVGIGVDPVQFGMIMLVNLGI---GLI---TPPVGAVLFVGSAIGKV 388

Query: 633 DPIRTGIQGFAYDIRTAILPFMFVFNTQLLLM----GIDSWW-HLML 674
             I + ++        A+LPF  +    L+L+     I  W  HL+L
Sbjct: 389 S-IESTVK--------ALLPFYAMLFVVLMLVTYVPAISLWLPHLVL 426