Pairwise Alignments

Query, 854 a.a., DUF3394 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

 Score =  387 bits (995), Expect = e-112
 Identities = 238/681 (34%), Positives = 374/681 (54%), Gaps = 59/681 (8%)

Query: 22  ARAPKGLPGRVLWFVPLCWSLFQLWYASPLPFIFDFGVLNDTQARSIHLTFAVFLAFTAY 81
           A  P+  P + L++V L +S+FQ+  A+       F  ++    R++H+ F +++ F +Y
Sbjct: 9   ATDPRDWP-KTLFYVALLFSIFQIVTAA-------FSPVSSIVLRAVHVGFLLWVVFLSY 60

Query: 82  PAMKGSPRDRIPLTDWLLALAGSFSAAYIYLFYAELAGRSGAPTQFDVIASVVGMVLLLE 141
           PA  G  R   PL  W+L+L G  +A Y ++F ++L  RSG  T  D+I  +V +VL+ E
Sbjct: 61  PA-HGRQRPWQPLA-WVLSLGGVATALYQWVFESDLIQRSGDLTTTDMIMGIVLVVLVFE 118

Query: 142 ATRRALGPPLMMVAALFLLYTFAGPYMPDVIAHKGASLNKAMSHLWLTTEGVFGVALGVS 201
           A RR +G  L ++  LFL Y   G Y+P  +AH+G  L++ ++ L   TEG++G    VS
Sbjct: 119 AARRVMGIALPIICGLFLAYGLFGEYLPGDLAHRGYGLDQIINQLSFGTEGLYGTPTYVS 178

Query: 202 TSFVFLFVLFGAMLERAGAGAYFIKVAFSMLGHMRGGPAKAAVVASGLSGLVSGSSIANV 261
            +++FLF+LFGA LE+AG    F   A  + GH  GGPAK AVV+S L G ++GS IANV
Sbjct: 179 ATYIFLFILFGAFLEKAGMIKLFTDFAMGLFGHKLGGPAKVAVVSSALMGTITGSGIANV 238

Query: 262 VTTGTFTIPLMKRVGFPGTKAGAVEVAASTNGQLTPPIMGAAAFLMVEYVGISYVEVIKA 321
           VTTG FTIPLMKR G+    AG VE  +S   Q+ PP+MGA AF+M E + + +VE+ KA
Sbjct: 239 VTTGQFTIPLMKRFGYKAAFAGGVEATSSMGSQIMPPVMGAVAFIMAETINVPFVEIAKA 298

Query: 322 AILPALISYIALIYIVHLEACKAGMSGLPRRHQSTVAQKLLSFTATILGLCVISAVVYYG 381
           A++PA + + ++ ++VHLEA ++ + GLP+    +    +      ++ L V+  +++ G
Sbjct: 299 ALIPACLYFGSVFWMVHLEAKRSDLKGLPKDQCPSAWGAVKDSWFLLIPLGVLVYLLFSG 358

Query: 382 IGWTKEAFGDAATPILTVVLLAAYVGLVKISAPYAKEGLGIDENLQYVPDVAPTLKSGLH 441
                  F       LT +++     ++K+S               Y    A  +  GL 
Sbjct: 359 ---RTPLFSGMVGLALTAIVILGSAIILKVS--------------NYALRCAFWIALGL- 400

Query: 442 YLLPIVVLVWCLTVERFSPGLSAFWASVFMIFILLTQRPLMALFNRTGSLGDAAKEGVTD 501
                      L V  F  G+   +A + ++        ++A +   G+     +E +  
Sbjct: 401 -----------LCVGFFRLGIGVVFAVIGVL--------VVACWFMQGT-----RETLVI 436

Query: 502 LLESLVSGARNMIGIGVATAAAGTVVGVVTLTGIGLVMTDFVEFISGGNLMLMLIFTAVI 561
            L +LV GAR+ + +G+A A  G+++ VV+LTG+      ++  I   NL+L LI T + 
Sbjct: 437 CLHALVDGARHAVPVGIACALVGSIIAVVSLTGVASTFAGYILAIGRDNLLLSLILTMLT 496

Query: 562 SLILGMGLPTTANYIVVSTLMAPVIVTLGAEHGLIIPLIAVHLFVFYFGILADDTPPVGL 621
            L+LGMG+PT  NYI+ S++ AP ++ LG      +PLI  H+FVFYFGILAD TPPV L
Sbjct: 497 CLVLGMGIPTIPNYIITSSIAAPALLELG------VPLIVSHMFVFYFGILADLTPPVAL 550

Query: 622 AAFAAAAIAKSDPIRTGIQGFAYDIRTAILPFMFVFNTQLLLMGIDSWWHLMLTILSSIT 681
           A FAAA IA+   ++         +   ++PFM V+N  L+L G D+ W     ++ ++ 
Sbjct: 551 ACFAAAPIARESGLKISFWAVRIALAGFVIPFMTVYNPALMLQG-DNLWMTAYMLIKTLL 609

Query: 682 AMLLFSAATQGWWLTKTKWWE 702
           A+ L+  A+ G+   K   WE
Sbjct: 610 AVGLWGMASTGYLQQKMPIWE 630