Pairwise Alignments

Query, 854 a.a., DUF3394 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 674 a.a., alpha-ketoglutarate TRAP transporter, 4TM/12TM components (from data) from Pseudomonas stutzeri RCH2

 Score =  378 bits (970), Expect = e-109
 Identities = 233/674 (34%), Positives = 364/674 (54%), Gaps = 58/674 (8%)

Query: 31  RVLWFVPLCWSLFQLWYASPLPFIFDFGVLNDTQARSIHLTFAVFLAFTAYPAMKGSPRD 90
           R L++V L +S++Q+  A+       F  ++    R+ H+ F + L F  YPA +G+ + 
Sbjct: 16  RALFYVALLFSIYQIVTAA-------FHPVSSQVLRAGHVGFLLLLVFLCYPA-RGNGKP 67

Query: 91  RIPLTDWLLALAGSFSAAYIYLFYAELAGRSGAPTQFDVIASVVGMVLLLEATRRALGPP 150
             P+  WLL LAG  +  Y + F A+L  RSG  T  D++  +  +VL+ EA RR +G  
Sbjct: 68  FQPVA-WLLGLAGFATFFYQWYFEADLIQRSGDMTTADMVVGLTLIVLVFEAARRVMGIA 126

Query: 151 LMMVAALFLLYTFAGPYMPDVIAHKGASLNKAMSHLWLTTEGVFGVALGVSTSFVFLFVL 210
           L ++ ALFL Y   G Y+P  +AH+G  L++ ++ L   TEG++G    VS +++FLF+L
Sbjct: 127 LPIICALFLAYGLLGEYLPGDLAHRGYYLDQIVNQLSFGTEGLYGTPTYVSATYIFLFIL 186

Query: 211 FGAMLERAGAGAYFIKVAFSMLGHMRGGPAKAAVVASGLSGLVSGSSIANVVTTGTFTIP 270
           FG+ LE+AG    F   A  + GH  GGPAK +VV+S L G ++GS +ANVVTTG FTIP
Sbjct: 187 FGSFLEQAGMIKLFTDFAMGLFGHKLGGPAKVSVVSSALMGTITGSGVANVVTTGQFTIP 246

Query: 271 LMKRVGFPGTKAGAVEVAASTNGQLTPPIMGAAAFLMVEYVGISYVEVIKAAILPALISY 330
           LMKR G+    AG VE  +S   Q+ PP+MGA AF+M E + + +VE+ KAA++PAL+ +
Sbjct: 247 LMKRFGYRPAFAGGVEATSSMGSQIMPPVMGAVAFIMAETINVPFVEIAKAALIPALLYF 306

Query: 331 IALIYIVHLEACKAGMSGLPRRHQSTVAQKLLSFTATILGLCVISAVVYYGIGWTKEAFG 390
            ++ ++VHLEA +AG+ GLP+    +    +      ++ L V+  +++ G       F 
Sbjct: 307 GSVFWMVHLEAKRAGLKGLPKDECPSAMAAVKERWYLLIPLVVLVWLLFSG---RTPMFA 363

Query: 391 DAATPILTVVLLAAYVGLVKISAPYAKEGLGIDENLQYVPDVAPTLKSGLHYLLPIVVLV 450
                 LT +++     ++K+S               +   +A  +  GL          
Sbjct: 364 GTIGLALTAIVILGSAIILKVS--------------NFALRIAFWIALGL---------- 399

Query: 451 WCLTVERFSPGLSAFWASVFMIFILLTQRPLMALFNRTGSLGDAAKEGVTDLLESLVSGA 510
             L    F  G+        +IF ++     +  F + G      ++ +   L +LV GA
Sbjct: 400 --LCAGFFQLGIG-------VIFGVIAALVAVCWFIKGG------RDTLVICLHALVEGA 444

Query: 511 RNMIGIGVATAAAGTVVGVVTLTGIGLVMTDFVEFISGGNLMLMLIFTAVISLILGMGLP 570
           R+ + +G+A A  G ++GVV+LTG+      ++  +   NL L L+ T +  L+LGMG+P
Sbjct: 445 RHAVPVGIACALVGVIIGVVSLTGVASTFAGYILAVGENNLFLSLLLTMLTCLVLGMGIP 504

Query: 571 TTANYIVVSTLMAPVIVTLGAEHGLIIPLIAVHLFVFYFGILADDTPPVGLAAFAAAAIA 630
           T  NYI+ S++ AP ++ LG      +PLI  H+FVFYFGI+AD TPPV LA FAAA IA
Sbjct: 505 TIPNYIITSSIAAPALLDLG------VPLIVSHMFVFYFGIMADLTPPVALACFAAAPIA 558

Query: 631 KSDPIRTGIQGFAYDIRTAILPFMFVFNTQLLLMGIDSWWHLMLTILSSITAMLLFSAAT 690
           K   ++  +      I   I+PFM V+N  L++ G D W   +  +  +  A+ L+ A  
Sbjct: 559 KERGLKISMWAIRIAIAGFIVPFMAVYNPALMMQGGD-WGATLYMLFKAAFAVGLWGAVF 617

Query: 691 QGWWLTKTKWWEVV 704
            G+       WE V
Sbjct: 618 TGYLQRPMALWEKV 631