Pairwise Alignments

Query, 854 a.a., DUF3394 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 426 a.a., TRAP transporter, DctM subunit from Pseudomonas stutzeri RCH2

 Score = 72.0 bits (175), Expect = 7e-17
 Identities = 60/192 (31%), Positives = 90/192 (46%), Gaps = 14/192 (7%)

Query: 208 FVLFGAMLERAGAGAYFIKVAFSMLGHMRGGPAKAAVVASGLSGLVSGSSIANVVTTGTF 267
           F+L GA +   G     I  A + +GH+RGG A  AV+A  L   +SGSS A V   G+ 
Sbjct: 62  FLLAGAFMTTGGVARRLIDFANACVGHIRGGLAIGAVLACMLFAALSGSSPATVAAVGSI 121

Query: 268 TIPLMKRVGFPGTKAGAVEVAASTNGQLTPPIMGAAAFLMVEYVGISYVEVIK---AAIL 324
            I  M R G+P      +   A T G L PP     + +MV Y   +   V K   A ++
Sbjct: 122 AIAGMVRSGYPQAFGAGIVCNAGTLGILIPP-----SVVMVVYAAATETSVGKLFMAGVV 176

Query: 325 PALISYIALIYIVHLEACKAGMSGLPR---RHQSTVAQKLLSFTATILGLCVISAVVYYG 381
           P ++   AL+  +++ A K  +  LPR   R   + A+K +     +L + +I   +Y G
Sbjct: 177 PGILLGGALMIAIYIIAVKKNLPALPRASFREWLSAARKAI---WGLLLMVIILGGIYSG 233

Query: 382 IGWTKEAFGDAA 393
           +    EA   AA
Sbjct: 234 MFTPTEAAAVAA 245



 Score = 36.2 bits (82), Expect = 4e-06
 Identities = 46/187 (24%), Positives = 88/187 (47%), Gaps = 22/187 (11%)

Query: 443 LLPIVVLVWCLTVERFSPGLSAFWASVFMIFILLTQRPLMALFNRTGSLGDAAKEGVTDL 502
           LL +V+++  +    F+P  +A  A+V+  F+ L          +  SL D  K     L
Sbjct: 220 LLLMVIILGGIYSGMFTPTEAAAVAAVYSAFVAL-------FVYKDISLRDCPKV----L 268

Query: 503 LESLVSGARNMIGIGVATAAAGTVVGVVTLTGIGLVMTDFVEFISGGNLMLMLIFTAVIS 562
           LES     +  I +    A A     V+T   I   +T +V   +G    + L+   ++ 
Sbjct: 269 LES----GKLSIMLMFIIANAMLFAHVLTTEQIPQAITAWV-IEAGLQPWMFLLVVNIVL 323

Query: 563 LILGMGLPTTANYIVVSTLMAPVIVTLGAEHGLIIPLIAVHLFVFYFGILADDTPPVGLA 622
           LI G  +  +A  ++++ ++ P+ + LG +   +  ++ V++ +   G++   TPPVGL 
Sbjct: 324 LIAGAFMEPSAIILILAPILFPIAIQLGIDPIHLGIIMVVNMEI---GLI---TPPVGLN 377

Query: 623 AFAAAAI 629
            F A+A+
Sbjct: 378 LFVASAV 384