Pairwise Alignments

Query, 854 a.a., DUF3394 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 425 a.a., D-gluconate TRAP transporter, large permease component (from data) from Pseudomonas stutzeri RCH2

 Score = 66.6 bits (161), Expect = 3e-15
 Identities = 83/375 (22%), Positives = 158/375 (42%), Gaps = 38/375 (10%)

Query: 208 FVLFGAMLERAGAGAYFIKVAFSMLGHMRGGPAKAAVVASGLSGLVSGSSIANVVTTGTF 267
           F+L G ++   G     I +A +  GH RGG    A+ AS L   +SGS++A+     T 
Sbjct: 62  FILAGELMNAGGISRRIIAMAQAYFGHKRGGLGYVAIAASVLLASMSGSALADTAALATL 121

Query: 268 TIPLMKRVGFPGTKAGAVEVAASTNGQLTPPIMGAAAFLMVEYVGISYVEVIKAAILPAL 327
            +P+M+  G+P + +  +  A      + PP M    + +V   G S  ++  A ++P L
Sbjct: 122 LLPMMRERGYPLSSSSGLVAAGGIIAPIIPPSMPFVIYGVV--TGTSISQLFLAGMVPGL 179

Query: 328 ISYIALIYIVHLEACKAGMSGLPRRHQSTVAQKLLSFTATILGLCVISAVVYYGIGWTKE 387
           I  + LI    L A +      P++ +++ A++          L ++  ++  G+     
Sbjct: 180 IMGMGLIVAWTLIARRIDE---PKQEKASAAERRRVLVDGAAAL-MLPVIIVGGLR---- 231

Query: 388 AFGDAATPILTVVLLAAYVGLVKISAPYAKEGLGIDENLQYVPDVAPTLKSGLHYLLPIV 447
             G   TP    V+ A Y   V           G+   ++ +   + T  S +       
Sbjct: 232 --GGLFTPTEAAVVAAVYALAVSTLLYRELNWAGL---VEVLTRASRTTASVMFLCAAAT 286

Query: 448 VLVWCLTVERFSPGLSAFWA------SVFMIFILLTQRPLMALFNRTGS---LGD----- 493
           V  + +T+ +    ++A          + M+ I+L    +  + + T +   LG      
Sbjct: 287 VSAYMITLAQLPDEIAAMLGPLAQDPKLLMVAIMLLMIAVGMVLDLTPTILILGPVLAPI 346

Query: 494 AAKEGVTDLLESLVSGARNMIG-IGVATAAAGTVVGVVTLTGIGLVMTDFVEFISGGNLM 552
           A K G+  +   ++     +IG IG+ T   GTV+ VV   GIG +    +E +  G + 
Sbjct: 347 AIKAGIDPVYFGVMF---VLIGSIGLITPPVGTVLNVV--GGIGRLR---METLVRGVMP 398

Query: 553 LMLIFTAVISLILGM 567
             LI+  ++ L++ +
Sbjct: 399 FFLIYLVIVGLLIAV 413



 Score = 32.7 bits (73), Expect = 4e-05
 Identities = 40/183 (21%), Positives = 80/183 (43%), Gaps = 25/183 (13%)

Query: 502 LLESLVSGARNMIGIGVATAAAGTVVGVVTLTGIGLVMTDFVEFISGGNLMLMLIFTAVI 561
           L+E L   +R    +    AAA     ++TL  +   +   +  ++    +LM+    ++
Sbjct: 264 LVEVLTRASRTTASVMFLCAAATVSAYMITLAQLPDEIAAMLGPLAQDPKLLMVAIM-LL 322

Query: 562 SLILGMGLPTTANYIVVSTLMAPVIVTLGAEHGLIIPLIAVHLFVFYFGILADDTPPVGL 621
            + +GM L  T   +++  ++AP+ +  G     I P+    +FV   G +   TPPVG 
Sbjct: 323 MIAVGMVLDLTPTILILGPVLAPIAIKAG-----IDPVYFGVMFVL-IGSIGLITPPVGT 376

Query: 622 AAFAAAAIAKSDPIRTGIQGFAYDIRTAILPFMFVFNTQLLLMGIDSWWHLMLTILSSIT 681
                  I +   + T ++G        ++PF  ++   L+++G      L++ + S IT
Sbjct: 377 VLNVVGGIGRL-RMETLVRG--------VMPFFLIY---LVIVG------LLIAVPSIIT 418

Query: 682 AML 684
             L
Sbjct: 419 VPL 421