Pairwise Alignments

Query, 854 a.a., DUF3394 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 850 a.a., TRAP transporter, 4TM/12TM fusion protein from Pseudomonas stutzeri RCH2

 Score =  939 bits (2426), Expect = 0.0
 Identities = 483/844 (57%), Positives = 621/844 (73%), Gaps = 10/844 (1%)

Query: 12  QEMVAQADTGARAPKGLPGRVLWFVPLCWSLFQLWYASPLPFIFDFGVLNDTQARSIHLT 71
           +E++AQ D GAR+P G    V+  + L WSLFQLW ASPLPF+  FGVLNDT+ RSIHL 
Sbjct: 9   EELIAQ-DVGARSPAGPMAAVIAGLALLWSLFQLWIASPLPFVLGFGVLNDTETRSIHLA 67

Query: 72  FAVFLAFTAYPAMKGSPRDRIPLTDWLLALAGSFSAAYIYLFYAELAGRSGAPTQFDVIA 131
           FA+ LAF AYPA K SPRDR+PL D  L L  + SAAY+++ Y++LA R G  T  D++ 
Sbjct: 68  FALLLAFLAYPAFKRSPRDRVPLVDIALGLVAAASAAYLFIAYSQLAQRPGNLTTMDLVT 127

Query: 132 SVVGMVLLLEATRRALGPPLMMVAALFLLYTFAGPYMPDVIAHKGASLNKAMSHLWLTTE 191
           + +G+ LLLEATRRALGPPL ++A +FL+Y+ AGP+MP ++AH+G S     +H W+TTE
Sbjct: 128 ACIGIPLLLEATRRALGPPLAIIALVFLVYSVAGPWMPGLLAHRGVSFTALANHQWITTE 187

Query: 192 GVFGVALGVSTSFVFLFVLFGAMLERAGAGAYFIKVAFSMLGHMRGGPAKAAVVASGLSG 251
           GVFG+ALGVSTSFVFLFVLFGA+LERAGAG YFI++AFSMLGH RGGPAKAAVVASG++G
Sbjct: 188 GVFGIALGVSTSFVFLFVLFGALLERAGAGHYFIQLAFSMLGHFRGGPAKAAVVASGMTG 247

Query: 252 LVSGSSIANVVTTGTFTIPLMKRVGFPGTKAGAVEVAASTNGQLTPPIMGAAAFLMVEYV 311
           L+SGSSIANVVTTGTFTIP+MKR GF   KAGAVEVA+S NGQ+ PP+MGAAAFLMVEYV
Sbjct: 248 LISGSSIANVVTTGTFTIPMMKRTGFSAEKAGAVEVASSVNGQIMPPVMGAAAFLMVEYV 307

Query: 312 GISYVEVIKAAILPALISYIALIYIVHLEACKAGMSGLPRRHQSTV-AQKLLSFTATILG 370
           GI YVEVIK A LPALISYIALIYIVHLE+ K G+  LPR + +    Q+L+ F      
Sbjct: 308 GIPYVEVIKHAFLPALISYIALIYIVHLESMKLGLQALPRANVAKPWMQRLIGFVFGAAL 367

Query: 371 LCVISAVVYYGIGWTKEAFGDAATPILTVVLLAAYVGLVKISA---PYAKEGLGIDENLQ 427
           +  +S  VYYG+GW K   GD+A  ++  +L   Y+GL+KI+A   P   E   +   L+
Sbjct: 368 ISGLSLGVYYGLGWLKPLLGDSALWVIGALLAVVYLGLLKIAASNPPLPHEDPNMP--LE 425

Query: 428 YVPDVAPTLKSGLHYLLPIVVLVWCLTVERFSPGLSAFWASVFMIFILLTQRPLMALFNR 487
            +P+  P L SGLH+LLP+VVLVWCL +ER SPGLSAFW SV ++ ILLTQRPL++    
Sbjct: 426 KLPETRPVLLSGLHFLLPVVVLVWCLMIERLSPGLSAFWGSVMLVIILLTQRPLLSWMRH 485

Query: 488 TGSLGDAA-KEGVTDLLESLVSGARNMIGIGVATAAAGTVVGVVTLTGIGLVMTDFVEFI 546
             S  D    +GV DL E L++GARNMIGIG+ATAAAG +VG V+ TG+GLV+ D VE +
Sbjct: 486 DRSHPDGTFMDGVIDLREGLIAGARNMIGIGIATAAAGIIVGAVSQTGVGLVLADLVELL 545

Query: 547 SGGNLMLMLIFTAVISLILGMGLPTTANYIVVSTLMAPVIVTLGAEHGLIIPLIAVHLFV 606
           S GNL+LML+ TA +SLILGMGLPTTANYIVVS+L+APVIV LG ++GLI+PLIAVHLFV
Sbjct: 546 SMGNLLLMLLLTAFLSLILGMGLPTTANYIVVSSLLAPVIVALGQQNGLIVPLIAVHLFV 605

Query: 607 FYFGILADDTPPVGLAAFAAAAIAKSDPIRTGIQGFAYDIRTAILPFMFVFNTQLLLMGI 666
           FYFGI+AD TPPVGLA+FAAAA++K DPIRTG+  F Y +RTA LPF+F+FNT LLL+G+
Sbjct: 606 FYFGIMADVTPPVGLASFAAAAVSKGDPIRTGVTAFYYSLRTAALPFLFIFNTDLLLIGV 665

Query: 667 DSWWHLMLTILSSITAMLLFSAATQGWWLTKTKWWEVVALLVLTFTFFRPGFWWDMVYPA 726
           D +WH +L  + +  AML+F+A TQG++L +++W+E V LL++ FT FRPGFW DM++  
Sbjct: 666 D-FWHGVLIFIVATIAMLVFAAGTQGYFLVRSRWYESVLLLLVAFTLFRPGFWMDMIHDP 724

Query: 727 QVMYAGTKLEQIVEQAPVGQPIQMIVAGENLKGEYTSKTVQLPFEDRAVSAQERIASMGL 786
                  +L + +        +++ V GE+  G+     + L   D A S +E++  +GL
Sbjct: 725 YQEIPPAQLVEALGNVDEDSQLRLRVLGEDAVGDPREFVLLLAIPDGA-SGEEKLEKIGL 783

Query: 787 TLLNDKNRMLVEMVEFGSPAEAAGIDFDWEIRSVVVDSDRPMKEWVFLPAILLTLLLAWN 846
               +  ++LV+ V FGSPA  AG++FD +I SV   +DR  KE ++ P  LL  L+ W 
Sbjct: 784 LTYEEDGKLLVDSVTFGSPAAEAGLEFDQQILSVRAPTDRWPKELMWAPGFLLFALIVWM 843

Query: 847 QKRR 850
           Q+RR
Sbjct: 844 QRRR 847