Pairwise Alignments

Query, 854 a.a., DUF3394 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 427 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Acidovorax sp. GW101-3H11

 Score = 72.8 bits (177), Expect = 4e-17
 Identities = 57/195 (29%), Positives = 88/195 (45%), Gaps = 6/195 (3%)

Query: 157 LFLLYTFAGPYMPDVIAHKGASLNKAMSHLWLTTE---GVFGVALGV---STSFVFLFVL 210
           L LL TF    M  V       L+     LW+       +  VA GV   S   +  FVL
Sbjct: 4   LVLLGTFFVLMMIGVPIAYSLGLSALAGALWIDLPLDAVMIQVASGVNKFSLLAIPFFVL 63

Query: 211 FGAMLERAGAGAYFIKVAFSMLGHMRGGPAKAAVVASGLSGLVSGSSIANVVTTGTFTIP 270
            GA++   G     +  A  ++G +RGG +   ++AS   G +SGSS+A+  + G+  IP
Sbjct: 64  AGAIMAEGGMARRLVAFAGVLVGFIRGGLSLVNILASTFFGAISGSSVADTASIGSVLIP 123

Query: 271 LMKRVGFPGTKAGAVEVAASTNGQLTPPIMGAAAFLMVEYVGISYVEVIKAAILPALISY 330
            M++ G+P   A AV V+ S    L PP   A  + +     +S   +  A +LP L+  
Sbjct: 124 EMEKKGYPRPFATAVTVSGSVQAILIPPSHNAVLYSLAAGGTVSIAALFMAGVLPGLLMG 183

Query: 331 IALIYIVHLEACKAG 345
           + L  +    A + G
Sbjct: 184 LTLAALCLFTAHREG 198



 Score = 40.0 bits (92), Expect = 3e-07
 Identities = 40/152 (26%), Positives = 75/152 (49%), Gaps = 20/152 (13%)

Query: 513 MIGIGVATAAAGTVVGVVTLTGIGLVMTDFVEFISGGNLMLMLIFTAVISLILGMGLPTT 572
           MI IG A A       ++T+  I + +T F+  +S  N  ++L    ++ L+LG  +  +
Sbjct: 280 MILIGFAAAFGY----LMTMMMIPMKVTAFLTSLSD-NKYVILAMINIMLLLLGCLMDMS 334

Query: 573 ANYIVVSTLMAPVIVTLGAEHGLIIPLIAVHLFVFYFGILADDTPPVGLAAFAAAAIAKS 632
              ++++ ++ PV+  LG +      ++ V+L +   G++   TPPVG   F  AA+AK 
Sbjct: 335 PLILILTPILLPVVKMLGVDPVHFGMIMMVNLGI---GLI---TPPVGTVLFTGAAVAK- 387

Query: 633 DPIRTGIQGFAYDIRTAILPFMFVFNTQLLLM 664
             +  GI      +  A++PF       LL++
Sbjct: 388 --LPLGI------VTRAMMPFFVALFVVLLMV 411