Pairwise Alignments

Query, 854 a.a., DUF3394 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 427 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Xanthomonas campestris pv. campestris strain 8004

 Score = 69.3 bits (168), Expect = 4e-16
 Identities = 53/176 (30%), Positives = 85/176 (48%), Gaps = 4/176 (2%)

Query: 207 LFVLFGAMLERAGAGAYFIKVAFSMLGHMRGGPAKAAVVASGLSGLVSGSSIANVVTTGT 266
           LF+  G ++ R G     I +A S++G +RGG  + +V++S   G VSGS+IA+V   G 
Sbjct: 60  LFIFAGELMLRGGISERLIALASSLVGRVRGGLGQVSVLSSLFFGGVSGSAIADVSAVGG 119

Query: 267 FTIPLMKRVGFPGTKAGAVEVAASTNGQLTPPIMGAAAFLMVEYVGISYVEVIKAAILPA 326
             IP M + G+    A  V + A+    L PP      F      G+S  ++  A I+PA
Sbjct: 120 TMIPQMIKRGYDRDYAVNVSMTAALVALLVPPSHNLILFSAAAGGGLSIADLFAAGIVPA 179

Query: 327 LISYIALIYIVHLEACKAGMSGLPRRHQSTVAQKLLSFTATILGLCVISAVVYYGI 382
           L+   A++   +  A   G    P      VA +L      + GL ++ A+++ GI
Sbjct: 180 LLMTAAMMVTGYAVARHRGYGTEPFPGWRAVALRLF---GALPGLGLV-ALIFIGI 231



 Score = 29.3 bits (64), Expect = 5e-04
 Identities = 29/127 (22%), Positives = 54/127 (42%), Gaps = 10/127 (7%)

Query: 507 VSGARNMIGIGVATAAAGTVVG-VVTLTGIGLVMTDFVEFISGG-NLMLMLIFTAVISLI 564
           V+ A    G+ +   A   V G ++    +      F++ I+   N +L++I   V+ L+
Sbjct: 269 VTHAARTTGVILFVIATAAVFGWLLAYLQVPAAAVKFLQAIADSKNTVLLMI--VVMLLL 326

Query: 565 LGMGLPTTANYIVVSTLMAPVIVTLGAEHGLIIPLIAVHLFVFYFGILADDTPPVGLAAF 624
           LGM +      ++ + +  PV+   G      I  I   L +   G +   TPP+G   F
Sbjct: 327 LGMFMDLAPKILICTPIFLPVVKAYG------IDPIHFGLVMVLAGGIGLITPPIGSVLF 380

Query: 625 AAAAIAK 631
              +I +
Sbjct: 381 IGTSIGE 387