Pairwise Alignments

Query, 854 a.a., DUF3394 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 466 a.a., alpha-ketoglutarate TRAP transporter, large permease component (from data) from Shewanella amazonensis SB2B

 Score = 80.5 bits (197), Expect = 2e-19
 Identities = 129/499 (25%), Positives = 206/499 (41%), Gaps = 101/499 (20%)

Query: 152 MMVAALFL-LYTFAGPYMPDVIAHKGASLNKAMSHLWLTTEGVFGVAL----GVSTSFVF 206
           M +A LFL L+      MP  IA   +S+   ++ L  + + +  VAL      S  +  
Sbjct: 1   MTIATLFLTLFLCMLLGMPIAIALGFSSM---LTILLFSNDSLASVALKLYEATSEHYTL 57

Query: 207 L----FVLFGAMLERAGAGAYFIKVAFSMLGHMRGGPAKAAVVASGLSGLVSGSSIANVV 262
           L    F+L  A L   G     I  A   +GH+RGG A A+V+A  L   VSGSS A V 
Sbjct: 58  LAIPFFILSSAFLSTGGVARRIIDFAMDSVGHIRGGLAMASVMACMLFAAVSGSSPATVA 117

Query: 263 TTGTFTIPLMKRVGFPGTKAGAVEVAASTNGQLTPPIMGAAAFLMVEYVG---ISYVEVI 319
             G+  I  M R G+P   A  V   + T G L PP     + +M+ Y     +S   + 
Sbjct: 118 AIGSIVIVGMVRAGYPQKFAAGVITTSGTLGILIPP-----SIVMLVYAAATEVSAARMF 172

Query: 320 KAAILPALISYIALIYIVHLEACKAGMSGLPRRHQSTVAQKLLSFTATILGLCVISAV-- 377
            A ++P L+  + L+  +++    A +  LP R    V    LS    + GL +I  V  
Sbjct: 173 MAGLIPGLLMGVLLMVAIYI---VARIKNLPSRPFPGVKALSLSSAKAMGGLALIFIVLG 229

Query: 378 -VYYGIGWTKEAFGDAATPILTVVLLAAY----VGLVKISAPYAKEGLGIDENLQYVPDV 432
            +Y G+    EA   AA   +   L+A +    +G +K   P+ KEG  I         +
Sbjct: 230 SIYGGVASPTEA---AAVACVYAYLVAVFGYRDIGPLK-EVPWRKEGEAI---------L 276

Query: 433 APTLKSGLHYLLPIVVLVWCLTVERFSPGLSAFWASVFMIFILLTQRPLMALFNRTGSLG 492
           A  +++ LH  L ++                             T + +  +      + 
Sbjct: 277 AAIVRNLLHVGLGLIKTP--------------------------TDKEIRNV------VR 304

Query: 493 DAAKEGVTDLLESLVSGARNMIGIGVATAAAGTVVGVVTLTGIGLVMTDFVEFISGGNLM 552
           D AK  V+ +L  +++ A  M+   V T      +   T+ G GL    F          
Sbjct: 305 DGAK--VSIMLLFIIANA--MLFAHVLTTERIPHIIAETIVGWGLPPWGF---------- 350

Query: 553 LMLIFTAVISLILGMGLPTTANYIVVSTLMAPVIVTLGAE--HGLIIPLIAVHLFVFYFG 610
             LI   ++ L  G  +  +A  ++++ ++ P+ V LG +  H  II ++ + +     G
Sbjct: 351 --LIIVNLLLLAAGNFMEPSAILLIMAPILFPIAVQLGIDPIHLGIIMVVNMEI-----G 403

Query: 611 ILADDTPPVGLAAFAAAAI 629
           +L   TPPVGL  F  A I
Sbjct: 404 ML---TPPVGLNLFVTAGI 419