Pairwise Alignments

Query, 854 a.a., DUF3394 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 427 a.a., TRAP dicarboxylate transporter, DctM subunit (NCBI) from Rhodospirillum rubrum S1H

 Score = 72.8 bits (177), Expect = 4e-17
 Identities = 73/244 (29%), Positives = 103/244 (42%), Gaps = 31/244 (12%)

Query: 188 LTTEGVFGVALGVSTSF-------VFLFVLFGAMLERAGAGAYFIKVAFSMLGHMRGGPA 240
           +TT  +  VAL + T         +  F+L G  L   G     I  A +M+GH  GG  
Sbjct: 35  MTTVPIESVALKLFTGIEKFEIMAIPFFILAGNFLTHGGVAKRMINFATAMVGHWYGGLG 94

Query: 241 KAAVVASGLSGLVSGSSIANVVTTGTFTIPLMKRVGFPGTKAGAVEVAASTNGQLTPPIM 300
              VVA  L   +SGSS A VV  G+  +P M + GFP      V   +   G L PP  
Sbjct: 95  LGGVVACALFAAISGSSPATVVAIGSILLPAMVKQGFPRRFGAGVITTSGALGILIPP-- 152

Query: 301 GAAAFLMVEY---VGISYVEVIKAAILPALISYIALIYIVHLEACKAGMSGLPRRHQSTV 357
              + +MV Y      S   +  A ++P L+    L     + A K     LP+   +T 
Sbjct: 153 ---SLVMVMYAVATNTSVGALFMAGVVPGLVLATLLGVTTSVIARKNNYPRLPKASWATR 209

Query: 358 AQKLLSFTATILGLCVISAV---VYYGIGWTKEAFGDAATPILTVVLLAAYV-------G 407
           A+   +F   I GL ++  V   +Y GI    EA   AA   +   L+A +V       G
Sbjct: 210 AK---AFREAIWGLMLVVIVIGGIYSGIFTPTEA---AAMSAVYAFLIAVFVYKDMPLRG 263

Query: 408 LVKI 411
           +VKI
Sbjct: 264 VVKI 267



 Score = 27.7 bits (60), Expect = 0.001
 Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 18/120 (15%)

Query: 551 LMLMLIFTAVISLILGMGLPTTANYIVVSTLMAPVIVTLGAEHGLIIPLIAVHLFVFYFG 610
           ++  L+   V+ L  G  +  ++  ++++ ++ PV + LG +      LI V++ V   G
Sbjct: 312 IVAFLLVVNVLLLAAGNFMEPSSIVLIMAPILFPVAMKLGIDPVHFGILIIVNMEV---G 368

Query: 611 ILADDTPPVGLAAFAAAAIAKSDPIRTGIQGFAYDIRTAILPFMFVFNTQLLLMGIDSWW 670
           +     PPVGL  + A+ I K      GI     ++  A++P++    T L  + + ++W
Sbjct: 369 MCH---PPVGLNLYVASGITK-----MGIS----ELTVAVMPWLL---TMLGFLIVVTYW 413