Pairwise Alignments

Query, 854 a.a., DUF3394 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 430 a.a., TRAP transporter large permease from Rahnella sp. WP5

 Score = 81.6 bits (200), Expect = 8e-20
 Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 3/171 (1%)

Query: 208 FVLFGAMLERAGAGAYFIKVAFSMLGHMRGGPAKAAVVASGLSGLVSGSSIANVVTTGTF 267
           F+L GA++   G     +  A+  +G +RGG +   +VAS   G +SGSS+A+  + G+ 
Sbjct: 61  FILAGAIMAEGGIARRLVSFAYIFVGFIRGGLSLVNIVASTFFGAISGSSVADTASIGSV 120

Query: 268 TIPLMKRVGFPGTKAGAVEVAASTNGQLTPPIMGAAAFLMVEYVGISYVEVIKAAILPAL 327
            IP M++ G+P   A AV  + S    LTPP   +  + +     +S   +  A ILP L
Sbjct: 121 MIPEMEKKGYPRDFAAAVTASGSVQAILTPPSHNSVIYSLATGGTVSIAALFIAGILPGL 180

Query: 328 ISYIALIYIVHLEACKAGMSGLPRRHQSTVAQKLLSFTATILGLCVISAVV 378
           +  + L+ +  + A K    G P+  +    Q L  F  T+ GL  I  ++
Sbjct: 181 LLSLTLMVMCVVFAHK---RGYPKGERVPFRQALKIFIDTLWGLMTIVIIM 228



 Score = 41.2 bits (95), Expect = 1e-07
 Identities = 38/152 (25%), Positives = 76/152 (50%), Gaps = 20/152 (13%)

Query: 513 MIGIGVATAAAGTVVGVVTLTGIGLVMTDFVEFISGGNLMLMLIFTAVISLILGMGLPTT 572
           MI IG A +       V+T   + + +T+F   IS  N  ++L++  ++ L++G  +   
Sbjct: 280 MILIGFAASFGA----VMTYMQLPMRITEFFTSISD-NKYVILMWINIMLLVIGTLMDMA 334

Query: 573 ANYIVVSTLMAPVIVTLGAEHGLIIPLIAVHLFVFYFGILADDTPPVGLAAFAAAAIAKS 632
              ++++ ++ PV+++LG +      ++ V+L +   G++   TPPVG   F A+A++K 
Sbjct: 335 PIILILTPVLLPVVLSLGIDPVHFGMIMLVNLGI---GLI---TPPVGSVLFVASAVSKQ 388

Query: 633 DPIRTGIQGFAYDIRTAILPFMFVFNTQLLLM 664
                        +  A+LPF  V    L+L+
Sbjct: 389 S---------IEKVVKAMLPFYCVLFVVLMLV 411