Pairwise Alignments

Query, 854 a.a., DUF3394 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 706 a.a., TRAP transporter permease from Rhodopseudomonas palustris CGA009

 Score =  338 bits (868), Expect = 5e-97
 Identities = 207/628 (32%), Positives = 324/628 (51%), Gaps = 54/628 (8%)

Query: 36  VPLCWSLFQLWYASPLPFIFDFGVLNDTQARSIHLTFAVFLAFTAYPAMKGSPRDRIPLT 95
           V + ++ FQL  A+       + VL     R +H+ F + L F           D     
Sbjct: 42  VAIAFASFQLVIAA-------WNVLPSQVVRGVHVGFLLLLTFGLIGNFTART-DFGRAI 93

Query: 96  DWLLALAGSFSAAYIYLFYAELAGRSGAPTQFDVIASVVGMVLLLEATRRALGPPLMMVA 155
            WL    G F   Y ++FYA+L  R G PT  D+    +  VL+ E TRR +GP L ++ 
Sbjct: 94  AWLTGAVGFFCGLYQWIFYADLIQRDGDPTHLDLAVGTLLAVLIFEGTRRLMGPALPIMC 153

Query: 156 ALFLLYTFAGPYMPDVIAHKGASLNKAMSHLWLTTEGVFGVALGVSTSFVFLFVLFGAML 215
            + LLY F G Y+P    H+G   ++ ++HL   TEG +GV + VS +++FLF+LFG+ L
Sbjct: 154 GVCLLYWFFGQYLPAPFNHRGYDFDQVITHLSFGTEGFYGVPIYVSATYIFLFILFGSFL 213

Query: 216 ERAGAGAYFIKVAFSMLGHMRGGPAKAAVVASGLSGLVSGSSIANVVTTGTFTIPLMKRV 275
           ERAG    F  V+  + G  RGGPAK AV ASG+ G +SGS +ANVVT G FTIPLM + 
Sbjct: 214 ERAGMIQLFTDVSLGLFGRSRGGPAKVAVFASGMMGTISGSGVANVVTVGQFTIPLMIKF 273

Query: 276 GFPGTKAGAVEVAASTNGQLTPPIMGAAAFLMVEYVGISYVEVIKAAILPALISYIALIY 335
           G+    A  VE  AS  GQ+ PP+MGA AF+M E +G+ Y  ++KAA++PA++ + +  +
Sbjct: 274 GYRRAFAAGVEATASMGGQIMPPVMGAVAFIMAETLGVDYAVIVKAAVIPAILYFASAFW 333

Query: 336 IVHLEACKAGMSGLPRRHQSTVAQKLLSFTATILGLCVISAVVYYGIGWTKEAFGDAATP 395
           +VHLEA K G+ G+ +    +  +  +     IL L  +  +++   G+T    G     
Sbjct: 334 MVHLEAGKHGLVGMKKSEIPSAWRAAVDRWYLILPLAALVFMLFE--GFTPLYAGSMGLA 391

Query: 396 ILTVVLLAAYVGLVKISAPYAKEGLGIDENLQYVPDVAPTLKSGLHYLLPIVVLVWCLTV 455
           +   ++L A +            G   +  L+YV  +   L  G                
Sbjct: 392 LTVALILGASI----------VHGFS-NTVLRYVFWIGLALVVG---------------- 424

Query: 456 ERFSPGLSAFWASVFMIFILLTQRPLMALFNRTGSLGDAAKEGVTDLLESLVSGARNMIG 515
                  S     +  I +++     +A   R G      +  +    +SL   A++ + 
Sbjct: 425 -----AASHNGLDIMRIVVIVAALVAIAAITRGG------RATLRACRDSLADSAKSALT 473

Query: 516 IGVATAAAGTVVGVVTLTGIGLVMTDFVEFISGGNLMLMLIFTAVISLILGMGLPTTANY 575
           +G+A A  GT++G++T TG+G V   +V  +   +L L L+ T ++S++LG G+PT   Y
Sbjct: 474 VGMACAIVGTIIGMMTQTGVGTVFGTWVIGLGEHSLFLALVMTMLLSILLGTGIPTIPTY 533

Query: 576 IVVSTLMAPVIVTLGAEHGLIIPLIAVHLFVFYFGILADDTPPVGLAAFAAAAIAKSDPI 635
           I+ + L AP +  LG      +PLI  H+F FY+GI+AD +PPV LAA AAA IA+ +P 
Sbjct: 534 IITAALAAPALAKLG------VPLIVSHMFAFYYGIMADLSPPVALAALAAAPIARENPD 587

Query: 636 RTGIQGFAYDIRTAILPFMFVFNTQLLL 663
           + G +     +   ++PF+ V++  L+L
Sbjct: 588 KIGWEAMRIALAGYVIPFIAVYSPALML 615