Pairwise Alignments

Query, 854 a.a., DUF3394 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 688 a.a., TRAP transporter permease from Rhodopseudomonas palustris CGA009

 Score =  188 bits (478), Expect = 8e-52
 Identities = 178/666 (26%), Positives = 288/666 (43%), Gaps = 115/666 (17%)

Query: 69  HLTFAVFLAFT--AYPAMKGSPRDRIPLTDWLLALAGSFSAAYIYLFYAELAGRSG---- 122
           +L  A+ L FT   +P    +  DRIPL D  L +  +  AA + +     A  +G    
Sbjct: 77  YLLIALMLPFTFLIFPGTSTARLDRIPLYDVALFVL-TIGAALVLMSTIRKAAEAGWEFG 135

Query: 123 -APTQFDVIASVVGMVLLLEATRRALGPPLMMVAALFLLYT-FAGPYMPDVIAHKGASLN 180
            APT    IA +V   LL+EA RR  G  L++    F +Y  FAG      +    ++L 
Sbjct: 136 GAPTHV-FIAGLVMWALLMEALRRTGGWSLLLCIFPFTVYPLFAGARWLGPLGGSQSTLE 194

Query: 181 KAMSHLWLTTEGVFGVALGVSTSFVFLFVLFGAMLERAGAGAYFIKVAFSMLGHMRGGPA 240
           +A ++  L+ E + G+ +      V  F++FG  L   GAG +FI ++FS+ G  RGG A
Sbjct: 195 QATAYHVLSGESLLGIPIQAFADTVIGFLVFGTALMLTGAGKFFINLSFSICGTFRGGAA 254

Query: 241 KAAVVASGLSGLVSGSSIANVVTTGTFTIPLMKRVGFPGTKAGAVEVAASTNGQLTPPIM 300
           K  + AS L G++SGS I+NV+T GT                            +T P+M
Sbjct: 255 KVCIFASALLGMMSGSIISNVLTAGT----------------------------MTIPVM 286

Query: 301 GAAAFLMVEYVGISYVEVIKAAILPALISYIALIYIVHLEACKAGMSGLPRRHQSTVAQK 360
             + F       I       A + P ++   A +                      +AQ 
Sbjct: 287 KKSGFRASYAAAIEACASTGAVLAPPVMGATAFV----------------------IAQF 324

Query: 361 L-LSFTATILGLCVISAVVYYGIGWTKEAFGDAATPILTVVLLAAYVGLVKISAPYAKEG 419
           L +S+    L   V +A+ Y G+    +A+                      +A +  EG
Sbjct: 325 LNVSYAEVALAAIVPAALYYIGLFMQVDAY----------------------AARHGLEG 362

Query: 420 LGIDENLQYVPDVAPTLKSGLHYLLPIVVLVWCLTVERFSPGLSAFWASVFMIFILLTQR 479
           +   E    +P +  TLK G +Y   I +LV  L   +     + F+A+  ++       
Sbjct: 363 IPRSE----LPSLWQTLKEGWYYAFVIALLVVMLLYFK-RESHAPFYATALLLV------ 411

Query: 480 PLMALFNRTGSLGDAAKEGVTDLLESLVSGARNMIGIGVATAAAGTVVGVVTLTGIGLVM 539
            L  +F++        +  +  ++  L    R  + +    A  G ++G  ++TG+   +
Sbjct: 412 -LNQIFSKE------TRWTLGSIVRFLEVNGRTFVELIGILAGCGLLIGAFSMTGVISSL 464

Query: 540 TDFVEFISGGNLMLMLIFTAVISLILGMGLPTTANYIVVSTLMAPVIVTLGAEHGLIIPL 599
              +  ++G N  L+L   A+ SLILG+GL TTA YI ++ L+AP +  LG         
Sbjct: 465 AADLLRLAGDNAFLLLAMCAITSLILGLGLTTTACYIFLAILVAPALEKLGLNR------ 518

Query: 600 IAVHLFVFYFGILADDTPPVGLAAFAAAAIAKSDPIRTGIQGFAYDIRTAILPFMFVFNT 659
           +AVH+F+FY+G+L+  TPPV +A+FAAA IA S  ++TG +          +PF FV N 
Sbjct: 519 MAVHMFIFYWGMLSSITPPVAIASFAAAGIAGSPAMKTGWESMWVGSIIYFIPFFFVMNP 578

Query: 660 QLLLMGIDSWWHLMLTILSSITAMLLFSAATQGWWL--------TKTKWWEVVALLVLTF 711
            L+L G D +   +  +  +    L      QG+ +           +W   VAL++  F
Sbjct: 579 ALVLQGPDPYLAALGLLTLAAAGTLCICGGIQGYQVGIGNLRHAGALEWPLRVALVIGGF 638

Query: 712 TFFRPG 717
               PG
Sbjct: 639 VLATPG 644