Pairwise Alignments

Query, 854 a.a., DUF3394 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., TRAP transporter large permease subunit from Rhodopseudomonas palustris CGA009

 Score = 66.2 bits (160), Expect = 4e-15
 Identities = 74/295 (25%), Positives = 117/295 (39%), Gaps = 35/295 (11%)

Query: 208 FVLFGAMLERAGAGAYFIKVAFSMLGHMRGGPAKAAVVASGLSGLVSGSSIANVVTTGTF 267
           F+L G  L   G     I  A +M+GH  GG   A V+A  L   VSGSS A V+  G+ 
Sbjct: 62  FILAGNFLTHGGVARRMINFATTMVGHWYGGLGLAGVMACALFAAVSGSSPATVIAIGSI 121

Query: 268 TIPLMKRVGFPGTKAGAVEVAASTNGQLTPPIMGAAAFLMVEYVGI------------SY 315
            +P M + GFP      V   +   G L PP +    + +     I            S 
Sbjct: 122 MLPAMVKQGFPKRFGAGVITTSGALGILIPPSIVMVVYAVATGGSIALDPDGNRVSSASV 181

Query: 316 VEVIKAAILPALISYIALIYIVHLEACKAGMSGLPRRHQSTVAQKLLSFTATILGLCVIS 375
            ++  A ++P ++    L       A K   +  PR  +++ A++  +F   I GL +I 
Sbjct: 182 GQLFMAGVIPGIMLASLLGLTTFYRAWK---NDYPRLPKASWAERFDAFRKCIWGLLLI- 237

Query: 376 AVVYYGIGWTKEAFGDAATPILTVVLLAAYVGLVKISAPYAKEGLGIDENLQYVPDV--- 432
            +V  GI      +    TP     + A Y  ++ +        +  D  L+ VP V   
Sbjct: 238 VIVLGGI------YAGMFTPTEAAAISAVYAFIIAVF-------VYRDMGLRDVPRVLLG 284

Query: 433 APTLKSGLHYLLPIVVLVWCLTVERFSPGLSAFW---ASVFMIFILLTQRPLMAL 484
           +  + + + Y++   VL   L      P   A W   A V  ++ LL    L+ L
Sbjct: 285 SANMSAMILYIITNAVLFSFLMANENIPQQIASWMSTAGVNWVWFLLVVNILLLL 339



 Score = 34.3 bits (77), Expect = 2e-05
 Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 19/135 (14%)

Query: 547 SGGNLMLMLIFTAVISLILGMGLPTTANYIVVSTLMAPVIVTLGAEHGLIIPLIAVHLFV 606
           +G N +  L+   ++ L+ G  +  T+  ++++ ++ PV V LG     +  L+ V++ V
Sbjct: 322 AGVNWVWFLLVVNILLLLAGNVMEATSIVLIMAPILFPVAVKLGIHPVHLGILMVVNMEV 381

Query: 607 FYFGILADDTPPVGLAAFAAAAIAKSDPIRTGIQGFAYDIRTAILPFMFVFNTQLLLM-- 664
              G+     PPVGL  + A+ IAK      GI     ++  A++P++      L L+  
Sbjct: 382 ---GMCH---PPVGLNLYVASGIAK-----MGIT----ELTVAVMPWLLTMLAFLALVTY 426

Query: 665 --GIDSWWHLMLTIL 677
              I  W   ML +L
Sbjct: 427 VPEISLWLPRMLGML 441