Pairwise Alignments

Query, 854 a.a., DUF3394 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 613 a.a., TRAP transporter large permease subunit from Rhodopseudomonas palustris CGA009

 Score = 78.6 bits (192), Expect = 1e-18
 Identities = 64/239 (26%), Positives = 110/239 (46%), Gaps = 25/239 (10%)

Query: 193 VFGVALGVSTSFVFLFVLFGAMLERAGAGAYFIKVAFSMLGHMRGGPAKAAVVASGLSGL 252
           V+GV    +   +  F   G +LER+G     ++    + G +RGG A A V    L   
Sbjct: 60  VYGVMNNETLLAIPFFTYMGLVLERSGMAEDLLETIGQLFGSIRGGIAYAVVFVGALLAA 119

Query: 253 VSGSSIANVVTTGTFTIPLMKRVGFPGTKAGAVEVAASTNGQLTPPIMGAAAFLMVEYVG 312
            +G   A+V++ G  ++P+M R G+    A  +  A+ T  Q+ PP +     +M + +G
Sbjct: 120 TTGVVAASVISMGLISLPIMLRYGYDRRVATGIIAASGTLAQIIPPSL--VLIVMADQLG 177

Query: 313 ISYVEVIKAAILPALI---SYIALIYIVHLEACKAGMSGLPRRHQSTVAQKLLSFTATIL 369
            S  ++ + A +P ++    Y   I++V + A KA   GLP   Q T+ +   +    I+
Sbjct: 178 RSVGDMYEGAFIPGIVLSLLYAFYIFLVTIFAPKAA-PGLPLEAQ-TLREPETARHPLIM 235

Query: 370 GLCVISA-------VVYYG-IGWTKEAFGDAATP----------ILTVVLLAAYVGLVK 410
            L  +SA       VV++G   W+K AF                ILT VL   ++G+++
Sbjct: 236 PLAALSAGGAAYLFVVHWGAFDWSKPAFDKVGLSQLVMQGFWFVILTAVLFRPFIGIIR 294