Pairwise Alignments

Query, 854 a.a., DUF3394 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 434 a.a., TRAP transporter permease from Rhodopseudomonas palustris CGA009

 Score = 65.1 bits (157), Expect = 8e-15
 Identities = 68/269 (25%), Positives = 114/269 (42%), Gaps = 29/269 (10%)

Query: 207 LFVLFGAMLERAGAGAYFIKVAFSMLGHMRGGPAKAAVVASGLSGLVSGSSIANVVTTGT 266
           +F+L GA +  +G      +   +++GH +GG   A + A G    +SGSS+A   T   
Sbjct: 67  MFLLMGAFVSASGISRELFRAGNTIVGHWKGGLGIATIAACGGFAAISGSSVATAATFSA 126

Query: 267 FTIPLMKRVGFPGTKAGAVEVAASTNGQLTPPIMGAAAFLMVEYVGISYVEVIKAAILPA 326
              P M+R G+P + +  V     T G + PP    A + ++    I   ++  A ILP 
Sbjct: 127 VAYPEMRRFGYPQSFSTGVIAVGGTLGAMLPPSTVLAVYGIITQQDIG--KLFIAGILPG 184

Query: 327 LISYIA-LIYIVHLEACKAGMSGLPRRHQSTVAQKLLSF----TATILGLCVISAVVYYG 381
           L++ +  +I I  +   + G   LP   +S+   +L +F    +  +L L VI   +Y G
Sbjct: 185 LLAIVMHMITIWIIGVARPGF--LPAGPKSSWGDRLAAFRDVWSPLLLFLFVIGG-LYGG 241

Query: 382 IGWTKEAFGDAATPILTVVLL-------------------AAYVGLVKISAPYAKEGLGI 422
                EA    A     + +L                   AA V  V I A      L I
Sbjct: 242 FFIPTEAGAVGAVGAFLIGILRGKLDREGILQSLLQATRTAAAVFTVLIGALCFGYFLTI 301

Query: 423 DENLQYVPDVAPTLKSGLHYLLPIVVLVW 451
            +  QYV +    L  G + +L +++L++
Sbjct: 302 TQTPQYVTEFLTGLGIGPYGVLALILLMY 330



 Score = 29.6 bits (65), Expect = 4e-04
 Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 17/128 (13%)

Query: 492 GDAAKEGVTDLLESLVSGARNMIGIGVATAAAGTVVGVVTLTGIGLVMTDFVEFISGGNL 551
           G   +EG+   L+SL+   R    +      A      +T+T     +T+F+  +  G  
Sbjct: 264 GKLDREGI---LQSLLQATRTAAAVFTVLIGALCFGYFLTITQTPQYVTEFLTGLGIGPY 320

Query: 552 MLMLIFTAVISLILGMGLPTTANYIVVSTLMAPVIVTLG-------------AEHGLIIP 598
            ++ +   ++ L+LG  +   A  I+   ++ PV+  LG              E GLI P
Sbjct: 321 GVLALIL-LMYLVLGCLMDAMAMVILTVPIVFPVVTALGFDPIWFGIIIVMTVELGLIHP 379

Query: 599 LIAVHLFV 606
            + +++FV
Sbjct: 380 PVGMNVFV 387



 Score = 27.3 bits (59), Expect = 0.002
 Identities = 17/81 (20%), Positives = 38/81 (46%), Gaps = 1/81 (1%)

Query: 257 SIANVVTTGTFTIPLMKRVGFPGTKAGAVEVAASTNGQLTPPIMGAAAFLMVEYVGISYV 316
           ++A V+ T     P++  +GF     G + V     G + PP+ G   F++   +    +
Sbjct: 339 AMAMVILTVPIVFPVVTALGFDPIWFGIIIVMTVELGLIHPPV-GMNVFVIKSVIKDVSM 397

Query: 317 EVIKAAILPALISYIALIYIV 337
             + A +LP +++ +  + I+
Sbjct: 398 STVFAGVLPFVVTDLIRLVIL 418