Pairwise Alignments

Query, 854 a.a., DUF3394 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 467 a.a., TRAP transporter for fumarate, succinate, L-malate, and 2-oxogulatarate, large permease component (from data) from Phaeobacter inhibens DSM 17395

 Score = 68.2 bits (165), Expect = 1e-15
 Identities = 115/488 (23%), Positives = 198/488 (40%), Gaps = 88/488 (18%)

Query: 129 VIASVVGMVLLLEATRRALGPPLMMVAALFLLYTFAGPYMPDVIAHKGASLNKAMSHLWL 188
           + + V+G++L+      ALG    + + LFLL             +  +SL      L+ 
Sbjct: 6   LFSMVIGLLLIGVPIAVALG----LSSTLFLLI------------YSDSSLASVAGTLFE 49

Query: 189 TTEGVFGVALGVSTSFVFLFVLFGAMLERAGAGAYFIKVAFSMLGHMRGGPAKAAVVASG 248
             EG F +        +  F+L  + +   G     I+ + + +GH+ GG A A V A  
Sbjct: 50  AFEGHFTLLA------IPFFILASSFMTTGGVARRIIRFSIACVGHLPGGLAIAGVFACM 103

Query: 249 LSGLVSGSSIANVVTTGTFTIPLMKRVGFPGTKAGAVEVAASTNGQLTPPIMGAAAFLMV 308
           L   +SGSS A VV  G+  I  M++VG+    A  V   A T G L PP     + +MV
Sbjct: 104 LFAALSGSSPATVVAIGSIVIAGMRQVGYSKEFAAGVICNAGTLGILIPP-----SIVMV 158

Query: 309 EY---VGISYVEVIKAAILPALISYIALIYIVHLEACKAGMSGLPRRHQSTVAQKLLSFT 365
            Y   V +S   +  A ++P L++ + L+  +++    A +  LP+       +   S  
Sbjct: 159 VYAAAVEVSVGRMFLAGVIPGLMAGLMLMVTIYV---MAKVKNLPKGEWLGWGEVAASAA 215

Query: 366 ATILGLCVISAV---VYYGIGWTKEAFGDAATPILTVVLLAAYV----GLVKISAPYAKE 418
              +GL +I  +   +Y GI    EA   AA   +    +A +V    G +K SAP  K+
Sbjct: 216 NASVGLLLIGIILGGIYGGIFTPTEA---AAVASVYAFFVATFVYRDMGPLK-SAPKPKD 271

Query: 419 GLGIDENLQYVPDVAPTLKSGLHYLLPIVVLVWCLTVERFSPGLSAFWASVFMIFILLTQ 478
            +G     Q++  +   L   + Y +P                 S F A          +
Sbjct: 272 -MG-----QFLTMLPKMLGQTVVYFIP-----------------SFFHADTRHALFEAGK 308

Query: 479 RPLMALFNRTGSLGDAAKEGVTDLLESLVSGARNMIGIGVATAAAGTVVGVVTLTGIGLV 538
             +  LF    +L    K  +TD            I   + +A  G V+ ++ +  I L+
Sbjct: 309 LTVTLLFVIANAL--ILKHVLTD------EQVPQQIATAMLSAGFGPVMFLIVVNVILLI 360

Query: 539 MTDFVEFISGGNLMLMLIFTAVISLILGMGLPTTANYIVVSTLMAPVIVTLGAEHGLIIP 598
              F+E    G L+++      I++ LG           +  +   +I+ +  E G+I P
Sbjct: 361 GGQFME--PSGLLVIVAPLVFPIAIELG-----------IDPIHLGIIMVVNMEIGMITP 407

Query: 599 LIAVHLFV 606
            + ++LFV
Sbjct: 408 PVGLNLFV 415



 Score = 35.8 bits (81), Expect = 6e-06
 Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 15/123 (12%)

Query: 547 SGGNLMLMLIFTAVISLILGMGLPTTANYIVVSTLMAPVIVTLGAEHGLIIPLIAVHLFV 606
           +G   ++ LI   VI LI G  +  +   ++V+ L+ P+ + LG +   +  ++ V++ +
Sbjct: 343 AGFGPVMFLIVVNVILLIGGQFMEPSGLLVIVAPLVFPIAIELGIDPIHLGIIMVVNMEI 402

Query: 607 FYFGILADDTPPVGLAAFAAAAIAKSDPIRTGIQGFAYDIRTAILPFMFVFNTQLLLMGI 666
              G++   TPPVGL  F  + +A       G+   A  +  A LPF+ V    L+++  
Sbjct: 403 ---GMI---TPPVGLNLFVTSGVA-------GMPMMA--VVRAALPFLAVLFVFLIMITY 447

Query: 667 DSW 669
             W
Sbjct: 448 IPW 450