Pairwise Alignments

Query, 854 a.a., DUF3394 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 869 a.a., TRAP transporter, 4TM/12TM fusion protein from Phaeobacter inhibens DSM 17395

 Score =  794 bits (2050), Expect = 0.0
 Identities = 434/857 (50%), Positives = 584/857 (68%), Gaps = 18/857 (2%)

Query: 9   QDVQEMVAQADTGARAPKGLPGRVLWFVPLCWSLFQLWYASPLP-FIFDFGVLNDTQARS 67
           +++Q++VA +D GAR P G  G  L  V + WS+FQ+  ASP+   +    V+N++  R 
Sbjct: 14  EELQDLVASSDAGARNPVGSVGLFLAIVAVIWSVFQVVLASPVSNLLLPGSVVNNS--RQ 71

Query: 68  IHLTFAVFLAFTAYPAMKGSPRDRIPLTDWLLALAGSFSAAYIYLFYAELAGRSGAPTQF 127
           IHL FA+FLA+ AYPA+K SP DRIP+ DW+LAL G+F+A Y Y+FY ++    G     
Sbjct: 72  IHLAFAIFLAYAAYPALKSSPTDRIPVQDWILALIGTFTALYGYIFYEKIVNSGGKGDDI 131

Query: 128 DVIASVVGMVLLLEATRRALGPPLMMVAALFLLYTFAGP--YMPDVIAHKGASLNKAMSH 185
           D I + +G+VLL E  RRALGP + +VA++F+LY F G    +PDVI  KGASL++AM  
Sbjct: 132 DTIFAAIGLVLLFEGARRALGPAMAIVASVFMLYVFFGSSELVPDVIRWKGASLDRAMEQ 191

Query: 186 LWLTTEGVFGVALGVSTSFVFLFVLFGAMLERAGAGAYFIKVAFSMLGHMRGGPAKAAVV 245
           +W+T+EGVFG+ALGVST FVFLFVLFGA+L++AGAG YFIK+AF  LGH+RGGPAKAAVV
Sbjct: 192 MWITSEGVFGIALGVSTKFVFLFVLFGALLDKAGAGNYFIKMAFGALGHLRGGPAKAAVV 251

Query: 246 ASGLSGLVSGSSIANVVTTGTFTIPLMKRVGFPGTKAGAVEVAASTNGQLTPPIMGAAAF 305
            S  +GL+SGSSIANVVTTGTFTIPLMKRVGF   +AG+VEVA+S NGQ+ PP+MGAAAF
Sbjct: 252 GSAATGLISGSSIANVVTTGTFTIPLMKRVGFSSEQAGSVEVASSVNGQIMPPVMGAAAF 311

Query: 306 LMVEYVGISYVEVIKAAILPALISYIALIYIVHLEACKAGMSGLPRRHQSTVAQKLLSFT 365
           LMVEYVGISYVEVI  A LPA ISYIAL+YIVHLEA K  M  L  R  S + + +    
Sbjct: 312 LMVEYVGISYVEVITHAFLPAAISYIALVYIVHLEAVKRNMPTLGNRVVS-MGRTIGGMA 370

Query: 366 ATILGLCVISAVVYYGIGWTKEAFGDAATPILTVVLLAAYVGLVKISAPYAKEGLGIDEN 425
           A   G   +   + Y I     A   A+  +L+++++AAY+GL+ ++A    + +  D N
Sbjct: 371 AFFAGFAALCYGIQYPIKAITAAIPGASGLVLSLLVVAAYLGLLWLAAG-TDDLVPDDPN 429

Query: 426 LQYV--PDVAPTLKSGLHYLLPIVVLVWCLTVERFSPGLSAFWASVFMIFILLTQRPLMA 483
              V  P V    K+GLHYLLPI+VLV+ L +E+ SPGLSAFWA+  +  ILLTQ+PL A
Sbjct: 430 AAEVELPVVGEIYKAGLHYLLPIIVLVYFLMIEQKSPGLSAFWATALLFVILLTQKPLKA 489

Query: 484 LFNRTGSLGDAAKEGVTDLLESLVSGARNMIGIGVATAAAGTVVGVVTLTGIGLVMTDFV 543
           LF    +L  +  +GV DL   L+ GARNMIGI +ATA AG +VG VTLTG+G VM++ V
Sbjct: 490 LFRGQSTLAHSFLDGVHDLWNGLIDGARNMIGIALATATAGVIVGTVTLTGVGQVMSELV 549

Query: 544 EFISGGNLMLMLIFTAVISLILGMGLPTTANYIVVSTLMAPVIVTLGAEHGLIIPLIAVH 603
           E +SGGNL+LMLI   ++SL+LGMGLPTTANYIVVS+LMA V+V LGA+ GL++PLIAVH
Sbjct: 550 ELMSGGNLILMLIMVGLLSLVLGMGLPTTANYIVVSSLMAGVVVELGAQSGLVVPLIAVH 609

Query: 604 LFVFYFGILADDTPPVGLAAFAAAAIAKSDPIRTGIQGFAYDIRTAILPFMFVFNTQLLL 663
           LFVFYFGI+AD TPPVGLA+FAAAA++  D IRTG   F Y +RT  LPF+F+FNT LLL
Sbjct: 610 LFVFYFGIMADVTPPVGLASFAAAAVSGGDAIRTGFVAFFYSLRTVALPFVFIFNTDLLL 669

Query: 664 MGIDSWWHLMLTILSSITAMLLFSAATQGWWLTKTKWWEVVALLVLTFTFFRPGFWWDMV 723
           + +  W   +L  +S+  A+L F+A T  +++T+ + +E V L+++ F  FRP F+ + +
Sbjct: 670 IDV-GWVQGILVAISATIAILAFTAGTMNYFITRNRIYESVLLVLVAFALFRPDFFMNRL 728

Query: 724 YPAQVMYAGTKLEQIVEQAPVGQPIQMIVAGENL-KGEYTSKTVQLPFEDRAVSAQERIA 782
            P         L + V  AP G  +++ V G +   GE  + T+ LP  D     Q ++ 
Sbjct: 729 MPPFASTDPAALVETVATAPAGSELRITVEGPDFDTGEQKTTTLILPVADGG-DGQAQVD 787

Query: 783 SMGLTLLNDKNRMLVEMVEFGSPAEAAGIDFDW------EIRSVVVDSDRPMKEWVFLPA 836
             GL LL +   + ++   FG+PA++    FD+       + SV   +D+  KE +F+PA
Sbjct: 788 GFGLMLLPEDGVVKLDEPMFGTPAQSGMDSFDFYGDEPVRLLSVQAPADQLPKELIFIPA 847

Query: 837 ILLTLLLAWNQKRRIKK 853
           +LL  ++A+ Q+ R  K
Sbjct: 848 LLLLAMIAFLQRARASK 864