Pairwise Alignments

Query, 854 a.a., DUF3394 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 491 a.a., TRAP transporter, subunit DctM from Phaeobacter inhibens DSM 17395

 Score = 92.4 bits (228), Expect = 6e-23
 Identities = 108/453 (23%), Positives = 197/453 (43%), Gaps = 53/453 (11%)

Query: 208 FVLFGAMLERAGAGAYFIKVAFSMLGHMRGGPAKAAVVASGLSGLVSGSSIANVVTTGTF 267
           F+L G ++ R G     ++ + +++GH+RGG A+  +++S L   +SGS++A+    G+ 
Sbjct: 62  FMLAGELMNRGGITVRLVEFSQALMGHLRGGLAQVNILSSILFAGLSGSAVADTSALGSM 121

Query: 268 TIPLMKRVGFPGTKAGAVEVAASTNGQLTPP--IMGAAAFLMVEYVGISYVEVIKAAILP 325
            IP M+R G+    A AV  A+S  G + PP  IM   A++M E V   ++    A I+P
Sbjct: 122 LIPAMEREGYSRKFAAAVTAASSVIGPIIPPSGIMIIYAYVMGESVAALFL----AGIVP 177

Query: 326 ALISYIALIYIVHLEACKAGMSGLPRRHQSTVAQKLL--SFTATILGLCVISAVVYYGIG 383
            ++  + L+ +V           +  R++   A++++  S    ++       +V   +G
Sbjct: 178 GVLVGVGLMIMVR---------AMADRYELPAARRVVFDSVEIGVMERWFSFGLVRLNLG 228

Query: 384 WTKEAFGDAATPILTVVLLAAYVGLVKISAPYAKEGLGIDENLQYVPDVAPTLKSGLHYL 443
                F   A      +   A+ G V  +      GL +       P      K  +  L
Sbjct: 229 LLLAQFVPLAEGAGAQMKWLAFFGAVLFA-----HGLMLGLRRVVSPAFRTICKRAVVPL 283

Query: 444 LPIVVLVWCLTVERFSPGLSAFWASVFMIFILLTQRPLMALFNRTGSLGDAAKEGVTDLL 503
              V+++  +    F+P  +A  A  + + I       M L +        ++ G+T  +
Sbjct: 284 QTPVLILGGILAGVFTPTEAAAVAVAYALLISFLVLGSMRLADLPQVF---SRAGITSAV 340

Query: 504 ESLVSGARNMIGIGVATAAAGTVVGVVTLTGIGLVMTDFVEFISGGNLMLMLIFTAVISL 563
             L+ G            AA +   VV+L+     + DF+  +S   L+L+ +   ++  
Sbjct: 341 VLLLVG------------AAMSFKTVVSLSHAPEQLADFILTLSENPLILLFLINLLL-F 387

Query: 564 ILGMGLPTTANYIVVSTLMAPVIVTLGAEHGLIIPLIAVHLFVFYFGILADDTPPVGLAA 623
           ++GM L      I++  ++ PV   LG E      ++ V+L V   G+    TPP+GL  
Sbjct: 388 VVGMFLDAGPAIIILGPILGPVFTDLGVESVHFAIIMCVNLTV---GLA---TPPMGLVL 441

Query: 624 FAAAAIAKSDPIRTGIQGFAYDIRTAILPFMFV 656
           F AAA++         Q     I  AILPF+ +
Sbjct: 442 FVAAAVS---------QERVTTIAKAILPFLAI 465