Pairwise Alignments

Query, 854 a.a., DUF3394 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 729 a.a., TRAP transporter for fumarate, succinate, L-malate, and 2-oxoglutarate, fused 4TM/12TM components (from data) from Marinobacter adhaerens HP15

 Score =  273 bits (697), Expect = 3e-77
 Identities = 192/639 (30%), Positives = 309/639 (48%), Gaps = 107/639 (16%)

Query: 89  RDRIPLTDWLLALAGSFSAAYIYLFYAEL----AGRSGAPTQFDVIASVVGMVLLLEATR 144
           R    + D +L +     AAY  + Y        G S AP      A++ G  L++E TR
Sbjct: 167 RSVFSVPDLVLIVCSLAVAAYFLVVYNTSMRMSTGTSFAPVGIS-FAAIAGTALIMELTR 225

Query: 145 RALGPPLMMVAALFLLYTFAGPYMPDVIAHKGASLNKAMSHLWLTTEGVFGVALGVSTSF 204
           R  G  L+++  +FL Y FAGPY+P  + + G S+ +  S ++ T  G+ G    VS+++
Sbjct: 226 RVAGMALVIIGLVFLAYVFAGPYLPGFLGYPGLSVQRFFSQVY-TDAGILGPTTAVSSTY 284

Query: 205 VFLFVLFGAMLERAGAGAYFIKVAFSMLGHMRGGPAKAAVVASGLSGLVSGSSIANVVTT 264
           + LF++F A L+ +  G YF+  AF+  G  RGGPAK ++ ASGL G+++G+S  NVV+T
Sbjct: 285 IILFIIFAAFLQSSKVGDYFVNFAFAAAGRSRGGPAKVSIFASGLMGMINGTSAGNVVST 344

Query: 265 GTFTIPLMKRVGFPGTKAGAVEVAASTNGQLTPPIMGAAAFLMVEYVGISYVEVIKAAIL 324
           G+ TIPLMK+VG+    AGAVE AAST GQ                            I+
Sbjct: 345 GSLTIPLMKKVGYSKQSAGAVEAAASTGGQ----------------------------IM 376

Query: 325 PALISYIALIYIVHLEACKAGMSGLPRRHQSTVAQKLLSFTATILGLCVISAVVYYGIGW 384
           P ++   A I         A ++G+P    +  A              +I A++Y+    
Sbjct: 377 PPIMGAGAFIM--------AEITGIPYTEIAIAA--------------IIPAILYF---- 410

Query: 385 TKEAFGDAATPILTVVLLAAYVGLVKISAPYAKEGLGIDENLQYVPDVAPTLKSGLHYLL 444
                   A+    V   AA  G+          G+  DE    +P +   +K   +  +
Sbjct: 411 --------ASVYFMVDFEAAKTGM---------RGMREDE----LPKLRTMMKQ-CYLFV 448

Query: 445 PIVVLVWCLTVERFSPGLSAFWASVFMIFILLTQRPLMALFNRTGSLGDAAKEGVTDLLE 504
           PI++L+                 ++FM + ++    L  +     S     K G+  +L+
Sbjct: 449 PIIILI----------------VALFMGYSVIRAGTLATVSAAVVSWLSPNKMGLRHILQ 492

Query: 505 SLVSGARNMIGIGVATAAAGTVVGVVTLTGIGLVMTDFVEFISGGNLMLMLIFTAVISLI 564
           +L   +   I I V  AAAG +VGV++LTG+G   +  +  ++  + +L LIF   IS++
Sbjct: 493 ALEIASYMAIQIIVVCAAAGVIVGVISLTGVGARFSVLLLDVAATSQLLALIFAMFISIL 552

Query: 565 LGMGLPTTANYIVVSTLMAPVIVTLGAEHGLIIPLIAVHLFVFYFGILADDTPPVGLAAF 624
           LGMG+PTTA Y V ++++AP +V LG E     PL A H FVFYF +++  TPPV LA++
Sbjct: 553 LGMGMPTTAAYAVAASVVAPGLVQLGIE-----PLTA-HFFVFYFAVVSAITPPVALASY 606

Query: 625 AAAAIAKSDPIRTGIQGFAYDIRTAILPFMFVFNTQLLLMGIDSWWHLMLTILSSITAML 684
           AAA I+ ++ + T +  F   I   I+PFMF +N  LL+     W+ +   ++++   + 
Sbjct: 607 AAAGISGANAMETSVASFRIGIAAFIVPFMFFYNGALLMEA--GWFEIARALVTATFGVY 664

Query: 685 LFSAATQGWWLT-KTKWWEVVALLVLTFTFFRPGFWWDM 722
           + S    GW+ +    W   + L+         G W D+
Sbjct: 665 MLSGGVLGWFASISASWITRLLLIAAALLMIEGGLWTDL 703