Pairwise Alignments

Query, 854 a.a., DUF3394 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 465 a.a., C4-dicarboxylate transport protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 70.5 bits (171), Expect = 2e-16
 Identities = 62/213 (29%), Positives = 98/213 (46%), Gaps = 24/213 (11%)

Query: 152 MMVAALF---LLYTFAGPYMPDVIAHKGASLNKAMSHLWLTTEGVFGVALGVSTSF---- 204
           M +A LF    +  F G  MP  IA   +S+   ++ L+ + + +  VAL +  S     
Sbjct: 1   MAIATLFCVLFICMFLG--MPIAIALGFSSM---LTILFFSNDSLASVALKLYESSSEHY 55

Query: 205 ----VFLFVLFGAMLERAGAGAYFIKVAFSMLGHMRGGPAKAAVVASGLSGLVSGSSIAN 260
               +  F+L  A L   G     I  A   +GH+RGG A A+V+A  L   VSGSS A 
Sbjct: 56  TLLAIPFFILSSAFLSTGGVARRIIDFAMDCVGHIRGGLAMASVMACMLFAAVSGSSPAT 115

Query: 261 VVTTGTFTIPLMKRVGFPGTKAGAVEVAASTNGQLTPPIMGAAAFLMVEYVGISYVEVIK 320
           V   G+  I  M + G+P   A  V   + T G L PP     + +M+ Y   + V V K
Sbjct: 116 VAAIGSIVIVGMVKAGYPEKFASGVITTSGTLGILIPP-----SIVMLVYAAATEVSVAK 170

Query: 321 ---AAILPALISYIALIYIVHLEACKAGMSGLP 350
              A ++P L+    ++ ++++ A    +  +P
Sbjct: 171 IFMAGLVPGLLLGFLIMVVIYIVARIKNLPSIP 203



 Score = 29.3 bits (64), Expect = 5e-04
 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 20/87 (22%)

Query: 560 VISLILGMGLPTTANYIVVSTL----------------MAPVIVTLGAEHGL-IIPLIAV 602
           +   I+GMGLP     I+V+ L                MAP++  +  + G+  I L  +
Sbjct: 336 IAEYIVGMGLPAWGFLIIVNLLLLAAGNFMEPSAIVLIMAPILFPIATQLGIDPIHLGII 395

Query: 603 HLFVFYFGILADDTPPVGLAAFAAAAI 629
            +     G+L   TPPVGL  F  + I
Sbjct: 396 MVVNMEIGML---TPPVGLNLFVTSGI 419