Pairwise Alignments

Query, 854 a.a., DUF3394 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 677 a.a., hypothetical transporter (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  388 bits (996), Expect = e-112
 Identities = 239/718 (33%), Positives = 382/718 (53%), Gaps = 65/718 (9%)

Query: 31  RVLWFVPLCWSLFQLWYASPLPFIFDFGVLNDTQARSIHLTFAVFLAFTAYPAMKGSPRD 90
           + L++  L +S+FQ+  A+       F  ++    R+ H+ F + + F +YPA+ G  R 
Sbjct: 17  KALFYSALIFSIFQIITAA-------FHPVSTQVLRATHVGFLLLVVFLSYPAV-GKSRP 68

Query: 91  RIPLTDWLLALAGSFSAAYIYLFYAELAGRSGAPTQFDVIASVVGMVLLLEATRRALGPP 150
             PL  WLL LAG  +AAY ++F A+L  RSG  T  D++  ++ +VL+ EA RR +G  
Sbjct: 69  WQPLA-WLLGLAGMATAAYQWIFEADLIQRSGELTDADMVMGIILIVLVFEAARRVMGWA 127

Query: 151 LMMVAALFLLYTFAGPYMPDVIAHKGASLNKAMSHLWLTTEGVFGVALGVSTSFVFLFVL 210
           L ++  +FL Y   G Y+P  + H+G  +++ ++ L   TEG++G    VS +++FLF+L
Sbjct: 128 LPIICCIFLAYGLFGQYLPGDLMHRGYGVDQIINQLSFGTEGLYGTPTYVSATYIFLFIL 187

Query: 211 FGAMLERAGAGAYFIKVAFSMLGHMRGGPAKAAVVASGLSGLVSGSSIANVVTTGTFTIP 270
           FGA LE+AG    F   A  + GH  GGPAK AVV+S L G ++GS +ANVVTTG FTIP
Sbjct: 188 FGAFLEQAGMIRLFTDFAMGLFGHKLGGPAKVAVVSSALMGTITGSGVANVVTTGQFTIP 247

Query: 271 LMKRVGFPGTKAGAVEVAASTNGQLTPPIMGAAAFLMVEYVGISYVEVIKAAILPALISY 330
           LMKR G+    AG VE  +S   Q+ PPIMGA AF+M E + + ++E+ KAA+LPAL+ +
Sbjct: 248 LMKRFGYRPAFAGGVEATSSMGSQIMPPIMGAVAFIMAETINVPFIEIAKAALLPALLYF 307

Query: 331 IALIYIVHLEACKAGMSGLPRRHQSTVAQKLLSFTATILGLCVISAVVYYGIGWTKEAFG 390
            ++ ++VHLEA +A + GLP+         + +    ++ L ++  +++ G         
Sbjct: 308 CSVFWMVHLEAKRANLCGLPKDQCPDPWAAVKARWYLLIPLFILVYLLFSG--------- 358

Query: 391 DAATPILTVVLLAAYVGLVKISAPYAKEGLGIDENLQYVPDVAPTLKSGLHYLLPIVVLV 450
              TP+ + ++  A   +V + +                  V     + L +   I + V
Sbjct: 359 --RTPLFSGMVGLALTSIVILGSAI----------------VLRLPSNALRFAFWIALGV 400

Query: 451 WCLTVERFSPGLSAFWASVFMIFILLTQRPLMALFNRTGSLGDAAKEGVTDLLESLVSGA 510
            C            F   + ++F ++     +  F + G      K+ +T  L +LV GA
Sbjct: 401 LC---------AGFFQMGIGVVFGVIAILVAICWFIKGG------KDTLTICLHALVEGA 445

Query: 511 RNMIGIGVATAAAGTVVGVVTLTGIGLVMTDFVEFISGGNLMLMLIFTAVISLILGMGLP 570
           R+ + +G+A A  G ++G+V+LTGI      ++  +   NL L L+ T +  L+LGMG+P
Sbjct: 446 RHAVPVGIACALVGVIIGIVSLTGIASTFASYILAVGQDNLFLSLVLTMITCLVLGMGIP 505

Query: 571 TTANYIVVSTLMAPVIVTLGAEHGLIIPLIAVHLFVFYFGILADDTPPVGLAAFAAAAIA 630
           T  NYI+ S++ AP ++ LG      +PLI  H+FVFYFGI+AD TPPV LA FAAA IA
Sbjct: 506 TIPNYIITSSIAAPALLDLG------VPLIVSHMFVFYFGIMADLTPPVALACFAAAPIA 559

Query: 631 KSDPIRTGIQGFAYDIRTAILPFMFVFNTQLLLMGIDSWWHLMLTILSSITAMLLFSAAT 690
           K    +  +      I   ++PFM V++  L+L   DSW   +  ++    A+ ++    
Sbjct: 560 KESGFKISLWAIRIAIAGFVIPFMAVYDPALMLQS-DSWLATIYVLIKVTVAIGIWGVVF 618

Query: 691 QGWWLTKTKWWEVV-------ALLVLTFTFFRPGFWWDMVYPAQVMYAGTKLEQIVEQ 741
            G+ L K   WE V       +L++ T      GF   +++  Q      KL+++  Q
Sbjct: 619 TGYLLQKLYLWERVIGFLAGGSLILATPLSDEIGFGLALLFIVQHSLRARKLKRLAAQ 676