Pairwise Alignments

Query, 854 a.a., DUF3394 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 639 a.a., TRAP transporter, 4TM/12TM fusion protein (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  199 bits (506), Expect = 4e-55
 Identities = 109/290 (37%), Positives = 165/290 (56%), Gaps = 2/290 (0%)

Query: 54  IFDFGVLNDTQARSIHLTFAVFLAFTAYPAMKGSPRDRIPLTDWLLALAGSFSAAYIYLF 113
           +  F  L++  AR   +  +V +   A+PA +G P  R    D  L      +  + +  
Sbjct: 33  VIAFATLDEATARFGAIALSVAIVGLAHPARRGRPSGRA--VDAALLAGFGCAGWWFHAV 90

Query: 114 YAELAGRSGAPTQFDVIASVVGMVLLLEATRRALGPPLMMVAALFLLYTFAGPYMPDVIA 173
            AEL       T   V+A + G+  ++    R  G  L ++A   +LY F GPY+P+ +A
Sbjct: 91  KAELWTGFFVATPLSVLAGLAGVFTVIVLAARVWGRSLAILAGALILYAFGGPYLPNAVA 150

Query: 174 HKGASLNKAMSHLWLTTEGVFGVALGVSTSFVFLFVLFGAMLERAGAGAYFIKVAFSMLG 233
           H G  L   +   W + +GVFG   G+  S + +F++ GA+L++ GAG   I+++ ++LG
Sbjct: 151 HFGVGLGDFVQITWYSFDGVFGRMTGLVASNLLIFLILGAVLQQTGAGESLIRLSTALLG 210

Query: 234 HMRGGPAKAAVVASGLSGLVSGSSIANVVTTGTFTIPLMKRVGFPGTKAGAVEVAASTNG 293
            +RGG A AA+ AS + G+++GS  AN+  TG FTIP++KR GF    AGAVE AAS+ G
Sbjct: 211 RVRGGGAHAAIAASAVFGMMNGSVAANIAGTGVFTIPMIKRQGFSSRFAGAVEAAASSGG 270

Query: 294 QLTPPIMGAAAFLMVEYVGISYVEVIKAAILPALISYIALIYIVHLEACK 343
           QLTPPIM A  F+M + VG+  + VI AA LPAL  Y+ L   V++EA +
Sbjct: 271 QLTPPIMAATVFVMADLVGLPLLMVIAAAALPALFKYLGLFAQVYVEALR 320