Pairwise Alignments

Query, 854 a.a., DUF3394 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 442 a.a., TRAP dicarboxylate transporter, DctM subunit (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 69.3 bits (168), Expect = 4e-16
 Identities = 57/229 (24%), Positives = 103/229 (44%), Gaps = 5/229 (2%)

Query: 186 LWLTTEGVFGVALGVSTSFVFLFVLFGAMLERAGAGAYFIKVAFSMLGHMRGGPAKAAVV 245
           L L  E +F      + + V LF+L G  L R G    F+ VA ++    +GG   A V+
Sbjct: 53  LSLVGERLFSGIDAFALTAVPLFILTGDALVRTGLSRKFLDVAEALTQFAKGGFGSATVL 112

Query: 246 ASGLSGLVSGSSIANVVTTGTFTIPLMKRVGFPGTKAGAVEVAASTNGQLTPPIMGAAAF 305
             G+   +SGS  A     G  TI  +   G+P   A A+  A +  G L PP   + A+
Sbjct: 113 VCGMFAAISGSDAAGAAAVGRMTIARLVESGYPRPYACALVAAGACTGILIPP---SIAY 169

Query: 306 LMVEYV-GISYVEVIKAAILPALISYIALIYIVHLEACKAGMSGLPRRHQSTVAQKLLSF 364
           +++  V GIS   +  AA++P L   ++++    +     G  G           +L + 
Sbjct: 170 IIIGLVLGISASTLFLAAVIPGLAILVSILVTNIIMNRLNGWEGGGNVSMPEYFSRLWTA 229

Query: 365 TATILGLCVISAVVYYGIGWTKEAFGDA-ATPILTVVLLAAYVGLVKIS 412
             +     ++  +++YGI   +    +A AT ++  +++   +G +K+S
Sbjct: 230 LKSGWYAFIVPGIIFYGIFSGRMTPTEAGATAVVVTIVMGFVLGTLKLS 278



 Score = 26.9 bits (58), Expect = 0.003
 Identities = 17/87 (19%), Positives = 37/87 (42%), Gaps = 1/87 (1%)

Query: 260 NVVTTGTFTIPLMKRVGFPGTKAGAVEVAASTNGQLTPPIMGAAAFLMVEYVGISYVEVI 319
           N+V      +PL + +G    +   + + A   G +TPP +G   F++    G S +++ 
Sbjct: 351 NIVILAPILLPLAEEIGMNEIQFCIMMITALGVGFITPP-LGLNLFVVSGITGESILKIA 409

Query: 320 KAAILPALISYIALIYIVHLEACKAGM 346
             A+       +  + I ++ A    +
Sbjct: 410 YRAVPFVFFMLLVTLMIAYIPAISTAL 436