Pairwise Alignments

Query, 854 a.a., DUF3394 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 743 a.a., TRAP transporter for fumarate, succinate, L-malate, and 2-oxoglutarate, fused 4TM/12TM components (from data) from Dinoroseobacter shibae DFL-12

 Score =  271 bits (692), Expect = 1e-76
 Identities = 188/633 (29%), Positives = 306/633 (48%), Gaps = 107/633 (16%)

Query: 96  DWLLALAGSFSAAYIYLFYAELAGRSGAPTQFDVI----ASVVGMVLLLEATRRALGPPL 151
           D +LA+ G   A Y+   Y  L  R+   T F  I    A+V G  L++E TRR  G  L
Sbjct: 185 DLVLAICGVAVATYLITIYGTLM-RNSTGTPFAPIGISIAAVAGTALIMELTRRVAGMAL 243

Query: 152 MMVAALFLLYTFAGPYMPDVIAHKGASLNKAMSHLWLTTEGVFGVALGVSTSFVFLFVLF 211
           +++A +FL Y F G Y+P  +     +  +  S ++ T  G+ G    VS++++ LF++F
Sbjct: 244 IVIAGIFLAYVFVGQYLPGFLNAPAVTWQRFFSQVY-TDAGILGPTTAVSSTYIILFIIF 302

Query: 212 GAMLERAGAGAYFIKVAFSMLGHMRGGPAKAAVVASGLSGLVSGSSIANVVTTGTFTIPL 271
            A L+ +  G YF+  AF+  G  RGGPAK A+ ASGL G+++G+S  NVV TG+ TIPL
Sbjct: 303 AAFLQASKVGDYFVNFAFAAAGQSRGGPAKVAIFASGLMGMINGTSAGNVVATGSLTIPL 362

Query: 272 MKRVGFPGTKAGAVEVAASTNGQLTPPIMGAAAFLMVEYVGISYVEVIKAAILPALISYI 331
           MK+VG+    AGAVE AAST GQ                            I+P ++   
Sbjct: 363 MKKVGYHKKTAGAVEAAASTGGQ----------------------------IMPPIMGAG 394

Query: 332 ALIYIVHLEACKAGMSGLPRRHQSTVAQKLLSFTATILGLCVISAVVYYGIGWTKEAFGD 391
           A I         A ++G+P    +  A              +I A++Y+           
Sbjct: 395 AFIM--------AEITGIPYTEIALAA--------------IIPAILYF----------- 421

Query: 392 AATPILTVVLLAAYVGLVKISAPYAKEGLGIDENLQYVPDVAPTLKSGLHYLLPIVVLVW 451
             +    V L AA +G+          G+  DE    +P     ++  ++  LPI++L++
Sbjct: 422 -VSVYFMVDLEAAKLGM---------RGMSRDE----LPKFNKMVRQ-VYLFLPIIILIY 466

Query: 452 CLTVERFSPGLSAFWASVFMIFILLTQRPLMALFNRTGSLGDAAKEGVTDLLESLVSGAR 511
            L                FM + ++    L  +     S     + G   + ++      
Sbjct: 467 AL----------------FMGYSVIRAGTLATVAAAVVSWFTPFRMGPRSIAKAFEIAGT 510

Query: 512 NMIGIGVATAAAGTVVGVVTLTGIGLVMTDFVEFISGGNLMLMLIFTAVISLILGMGLPT 571
             + I    A AG +VGV++LTG+G   +  +  I+  + +L L F   I+++LGMG+PT
Sbjct: 511 MSVQIIAVCACAGIIVGVISLTGVGARFSAVLLGIADTSQLLALFFAMCIAILLGMGMPT 570

Query: 572 TANYIVVSTLMAPVIVTLGAEHGLIIPLIAVHLFVFYFGILADDTPPVGLAAFAAAAIAK 631
           TA Y V ++++AP +V LG      IPL+  H FVFYF +L+  TPPV LA++AAA I+ 
Sbjct: 571 TAAYAVAASVVAPGLVQLG------IPLLTAHFFVFYFAVLSAITPPVALASYAAAGISG 624

Query: 632 SDPIRTGIQGFAYDIRTAILPFMFVFNTQLLLMGIDSWWHLMLTILSSITAMLLFSAATQ 691
           ++P+ T +  F   I   I+PFMF +N+ +L+ G  +W+ ++    +++  +   S+  Q
Sbjct: 625 ANPMETSVTSFKIGIAAFIVPFMFFYNSAILMDG--TWFEVLRAGATAVVGVFFLSSGVQ 682

Query: 692 GWWL-TKTKWWEVVALLVLTFTFFRPGFWWDMV 723
           GW++  +  W+  V L+         G   D++
Sbjct: 683 GWFMGGRAAWFLRVGLVFAALMLIEGGIMSDLI 715