Pairwise Alignments

Query, 854 a.a., DUF3394 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 595 a.a., TRAP transporter, 4TM/12TM fusion protein (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  207 bits (526), Expect = 2e-57
 Identities = 173/646 (26%), Positives = 292/646 (45%), Gaps = 109/646 (16%)

Query: 26  KGLPGRVLWFVPLCWSLFQLWYASPLPFIFDFGVLNDTQARSIHLTFA---VFLAFTAYP 82
           + +P R +W      +L  L  A  L  IF +G++ +  AR +H+      VFL   A P
Sbjct: 7   RAVPRRQVWI-----ALGALTVAFHLGLIF-YGLVPNLVARPLHMALILPWVFLFAAATP 60

Query: 83  AMKGSPRDRIPLTDWLLALAGSFSAAYIYLFYAELAGRSG-APTQFDVIASVVGMVLLLE 141
             +        ++  +L   G     +I L +  L  + G   + F V  ++  +++ +E
Sbjct: 61  VAR--------ISGAILTGLGIAGCLWIALNHQMLRNQYGFLESGFQVALAITLLLVAME 112

Query: 142 ATRRALGPPLMMVAALFLLYTFAGPYMPDVIAHKGASLNKAMSHLWLTTEGVFGVALGVS 201
             RRA+G PL +VA L LLY   G ++P    H G  L   +  L +   G++G   GVS
Sbjct: 113 GARRAIGWPLPLVALLALLYGLYGQHIPGEFGHAGTPLRSFLGTLVVAEGGLWGSLTGVS 172

Query: 202 TSFVFLFVLFGAMLERAGAGAYFIKVAFSMLGHMRGGPAKAAVVASGLSGLVSGSSIANV 261
              V +FV+FGA+L    AG  F+ VA +  G ++GG AK +V++S L G +SGS+ ANV
Sbjct: 173 VGVVAVFVIFGAVLNAGEAGQGFMNVAAAAAGRLKGGAAKVSVLSSALFGSISGSASANV 232

Query: 262 VTTGTFTIPLMKRVGFPGTKAGAVEVAASTNGQLTPPIMGAAAFLMVEYVGISYVEVIKA 321
            +TG  T+P M ++G+P   A A E  AS+ GQ                           
Sbjct: 233 ASTGAITLPAMTKLGYPRRLAAATEAVASSGGQ--------------------------- 265

Query: 322 AILPALISYIALIYIVHLEACKAGMSGLPRRHQSTVAQKLLSFTATILGLCVISAVVYYG 381
            I+P L+   A + +         ++G+P               + I+   ++ A++Y+ 
Sbjct: 266 -IMPPLMGAGAFVMVE--------LTGVPY--------------SEIMLAALLPAILYFA 302

Query: 382 IGWTKEAFGDAATPILTVVLLAAYVGLVKISAPYAKEGLGIDENLQYVPDVAPTLKSGLH 441
             W                      GL   ++ Y    + +++     P     L +   
Sbjct: 303 TVWQ---------------------GLNAFASRYDLRPIPVEDR----PARRQVLITSGF 337

Query: 442 YLLPIVVLVWCLTVERFSPGLSAFWASVFMIFILLTQRPLMALFNRTGSLGDAAKEGVTD 501
           +L+P   L+    +  F+ G +  +A+   IF  L      AL     SL     +G   
Sbjct: 338 FLVPFSTLL----IAMFALGYTPQYAAALAIFTGL------ALLFVDISLRPNPGQGFAR 387

Query: 502 LLESLVSGARNMIGIGVATAAAGTVVGVVTLTGIGLVMTDFVEFISGGNLMLMLIFTAVI 561
           L E+L++  + +  I      A  ++GV+ +TG+G+ +T  +   SGG L   L+ TA+ 
Sbjct: 388 LAEALLNAGKQVSMIAAIIICASIIIGVLGITGLGVKITSVILSGSGGALWPALLLTALA 447

Query: 562 SLILGMGLPTTANYIVVSTLMAPVIVTLGAEHGLIIPLIAVHLFVFYFGILADDTPPVGL 621
            L+LGM +PTTA Y++  ++  P ++ LG E     PL A HLFVF+F +L+  TPPV  
Sbjct: 448 CLLLGMEVPTTAAYVICVSVAGPALIELGLE-----PLQA-HLFVFWFALLSTITPPVCG 501

Query: 622 AAFAAAAIAKSDPIRTGIQGFAYDIRTAILPFMFVFNTQLLLMGID 667
           A F A+ + + + +R  +   A  +   ++P   + N  L+ +  +
Sbjct: 502 AVFIASGMVQENWLRVALTAMALGVGLYVIPLAMIANDALIRLSAE 547