Pairwise Alignments

Query, 854 a.a., DUF3394 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 677 a.a., TRAP transporter, 4TM/12TM fusion protein (RefSeq) from Shewanella sp. ANA-3

 Score =  388 bits (997), Expect = e-112
 Identities = 242/718 (33%), Positives = 384/718 (53%), Gaps = 65/718 (9%)

Query: 31  RVLWFVPLCWSLFQLWYASPLPFIFDFGVLNDTQARSIHLTFAVFLAFTAYPAMKGSPRD 90
           + L++  L +S+FQ+  A+       F  ++    R+ H+ F + + F +YPA+ G  R 
Sbjct: 17  KALFYTALVFSIFQIITAA-------FHPVSTQVLRATHVGFLLLIVFLSYPAV-GKSRP 68

Query: 91  RIPLTDWLLALAGSFSAAYIYLFYAELAGRSGAPTQFDVIASVVGMVLLLEATRRALGPP 150
             PL  W+L LAG  +AAY + F A+L  RSG  T  D++  VV +VL+ EA RR +G  
Sbjct: 69  WQPL-GWVLGLAGMATAAYQWFFEADLIQRSGELTDADMVIGVVLIVLVFEAARRVMGWA 127

Query: 151 LMMVAALFLLYTFAGPYMPDVIAHKGASLNKAMSHLWLTTEGVFGVALGVSTSFVFLFVL 210
           L ++  +FL Y   G Y+P  + H+G  +++ ++ L   TEG++G    VS +++FLF+L
Sbjct: 128 LPIICCIFLAYGLFGQYLPGDLMHRGYGVDQIINQLSFGTEGLYGTPTYVSATYIFLFIL 187

Query: 211 FGAMLERAGAGAYFIKVAFSMLGHMRGGPAKAAVVASGLSGLVSGSSIANVVTTGTFTIP 270
           FGA LE+AG    F   A  + GH  GGPAK AVV+S + G ++GS +ANVVTTG FTIP
Sbjct: 188 FGAFLEQAGMIRLFTDFAMGLFGHKLGGPAKVAVVSSAMMGTITGSGVANVVTTGQFTIP 247

Query: 271 LMKRVGFPGTKAGAVEVAASTNGQLTPPIMGAAAFLMVEYVGISYVEVIKAAILPALISY 330
           LMKR G+    AG VE  +S   Q+ PPIMGA AF+M E + + ++E+ KAA++PAL+ +
Sbjct: 248 LMKRFGYRPAFAGGVEATSSMGSQIMPPIMGAVAFIMAETINVPFIEIAKAALIPALLYF 307

Query: 331 IALIYIVHLEACKAGMSGLPRRHQSTVAQKLLSFTATILGLCVISAVVYYGIGWTKEAFG 390
            ++ ++VHLEA +A + GLP+         +      ++ L ++  +++ G         
Sbjct: 308 SSVFWMVHLEAKRANLCGLPKDQCPDPWAAVKERWYLLIPLFILIYLLFSG--------- 358

Query: 391 DAATPILTVVLLAAYVGLVKISAPYAKEGLGIDENLQYVPDVAPTLKSGLHYLLPIVVLV 450
              TP+ + ++  A   +V + +                  V     + + +   I + V
Sbjct: 359 --RTPLFSGMVGLALTSIVILGSAI----------------VLRLPSNAMRFAFWIALGV 400

Query: 451 WCLTVERFSPGLSAFWASVFMIFILLTQRPLMALFNRTGSLGDAAKEGVTDLLESLVSGA 510
            C     F  G+    A VF +  LL     +  F + G      K+ +T  L +LV GA
Sbjct: 401 LCAGF--FQMGI----AVVFGVIALLV---AVCWFIKGG------KDTLTICLHALVDGA 445

Query: 511 RNMIGIGVATAAAGTVVGVVTLTGIGLVMTDFVEFISGGNLMLMLIFTAVISLILGMGLP 570
           R+ + +G+A A  G ++G+V+LTGI      ++  +   NL L L+ T +  ++LGMG+P
Sbjct: 446 RHAVPVGIACALVGVIIGIVSLTGIASTFASYILAVGQDNLFLSLVLTMLTCMVLGMGIP 505

Query: 571 TTANYIVVSTLMAPVIVTLGAEHGLIIPLIAVHLFVFYFGILADDTPPVGLAAFAAAAIA 630
           +  NYI+ S++ AP ++ LG      +PLI  H+FVFYFGI+AD TPPV LA FAAA IA
Sbjct: 506 SIPNYIITSSIAAPALLDLG------VPLIVSHMFVFYFGIMADLTPPVALACFAAAPIA 559

Query: 631 KSDPIRTGIQGFAYDIRTAILPFMFVFNTQLLLMGIDSWWHLMLTILSSITAMLLFSAAT 690
           K   ++  +      I   ++PFM V+   L+L   DSW  +   +L +   + ++    
Sbjct: 560 KESGLKISLWAIRIAIAGFVIPFMAVYEPALMLQS-DSWLAIGFVMLKATVGIGIWGVIF 618

Query: 691 QGWWLTKTKWWEVV-------ALLVLTFTFFRPGFWWDMVYPAQVMYAGTKLEQIVEQ 741
            G+ L K  WWE V       +L++ T      GF   +++  Q      KL+++ EQ
Sbjct: 619 TGFLLQKLYWWERVIGFLAGASLILATPLSDEIGFGLALLFIVQHSLRVRKLKRLAEQ 676