Pairwise Alignments

Query, 145 a.a., universal stress protein from Vibrio cholerae E7946 ATCC 55056

Subject, 310 a.a., universal stress protein UspE (RefSeq) from Shewanella loihica PV-4

 Score = 50.1 bits (118), Expect = 3e-11
 Identities = 36/141 (25%), Positives = 72/141 (51%), Gaps = 9/141 (6%)

Query: 10  DLNEQGFADKAVQLAVWHAKHSNAEIHLLNVLPGIHMSMVATYFPKDA-----AAQMKND 64
           D + Q    K ++ A+  AK  +A++HL+N  PG  +++       DA       +M+++
Sbjct: 166 DDDHQTLNGKIIEHALDLAKKFDAQVHLVNGYPGTPVNLAIELPDFDAHTYSETIRMQHE 225

Query: 65  VRAQLKAFAEKHIAEEVVYKLHIAEGKPYATILDYAERLGADLIVMPSHKRSRIDKVMLG 124
            R    A +   I+ +     HI EG P   I + AE+L A+L+++ +  R+     ++G
Sbjct: 226 QRVCYLA-SNYGISSDFC---HIKEGLPEDVIPELAEQLDAELVILGTVGRTGFSAALIG 281

Query: 125 SVASKVVENSPINVMVVKPQG 145
           + A  V+++   +++ +KP G
Sbjct: 282 NTAEHVIDSINCDLLAIKPDG 302



 Score = 30.8 bits (68), Expect = 2e-05
 Identities = 36/154 (23%), Positives = 72/154 (46%), Gaps = 24/154 (15%)

Query: 2   YKHILVPVD--LNEQGFADKAVQLAVWHAKHSNAEIHLLNVLP-GIHMSMVATYFPKDAA 58
           Y  ILV VD   ++Q    +AV+LA   +K+  +    L++      M+ + +   ++A 
Sbjct: 4   YHKILVVVDPTSDKQSALARAVELA---SKNQASITVFLSIFDFSYEMTSILSGHEREA- 59

Query: 59  AQMKNDVRAQLKAFAEK----------HIAEEVVYKLHIAEGKPYATILDYAERLGADLI 108
             M+  V AQ +A+ +            I  EV++       +P+ +I+ +A     DLI
Sbjct: 60  --MRQGVIAQRRAWLDDILGGYKDSGVAIDSEVIW-----HNRPFESIILHAIEGSYDLI 112

Query: 109 VMPSHKRSRIDKVMLGSVASKVVENSPINVMVVK 142
           V  +H+  ++  V+       ++  +P+ V++VK
Sbjct: 113 VKGTHEHDKLKSVIFTPTDWHLMRKAPVPVLLVK 146