Pairwise Alignments

Query, 145 a.a., universal stress protein from Vibrio cholerae E7946 ATCC 55056

Subject, 373 a.a., putative universal stress protein UspA (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 43.9 bits (102), Expect = 3e-09
 Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 23/155 (14%)

Query: 5   ILVPVDLNEQGFADKAVQLAVWHAKHSNAEIHLLNVLPGIHMSMVATYFP---------- 54
           IL+PVD +   ++ KA +     AK  N+E+ LL+V       + A+  P          
Sbjct: 87  ILIPVDFSN--YSMKACEFGFNLAKTENSEVILLHVY---FTPIYASSLPYGDVFNYQIG 141

Query: 55  -----KDAAAQMKNDVRAQLKAFAEKHIAEE---VVYKLHIAEGKPYATILDYAERLGAD 106
                K    Q+ +D+ A      EK  + E   + Y   + EG P   IL YA+     
Sbjct: 142 DEESVKTIIQQVHSDLNALSDKIKEKVASGEFPDIKYSCILREGIPEEEILRYAKEQRPK 201

Query: 107 LIVMPSHKRSRIDKVMLGSVASKVVENSPINVMVV 141
           +I+M +  +S+ D  ++GSV +++++ S   V+ +
Sbjct: 202 VIIMGTRGKSQKDIDLIGSVTAEIIDRSRTAVLAI 236



 Score = 23.9 bits (50), Expect = 0.003
 Identities = 10/36 (27%), Positives = 23/36 (63%)

Query: 106 DLIVMPSHKRSRIDKVMLGSVASKVVENSPINVMVV 141
           D+I + S+KR+   ++   S+A K++ +S   ++V+
Sbjct: 336 DIITLTSYKRNIFARLFNPSIARKMIFHSDTPLLVI 371