Pairwise Alignments

Query, 1291 a.a., DUF3971 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1515 a.a., membrane protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  334 bits (856), Expect = 4e-95
 Identities = 250/849 (29%), Positives = 400/849 (47%), Gaps = 38/849 (4%)

Query: 8   LGRILMWLLVSLLIVLALAVTALRILLPQMNRFQAEIQHWLNQNSSVQVAIADVQGYWRN 67
           LGRI    L +LL++ AL V+ +R LLPQ+ + +  +  +L +N  ++V ++ +   W+ 
Sbjct: 10  LGRICGLTLATLLVLFALGVSLIRSLLPQLEQARDRVTDYLWENYRIEVKVSRLAAEWQA 69

Query: 68  THPSLSLQTLQAHWPDSNDIQLNAASVEIEFDLLQSLWQRQPVVADLTVNG--LVLDLRA 125
             PSL+++ L     +   + L     +I+ D  Q+L  R+P V  +   G  + LDL A
Sbjct: 70  FGPSLTVENLILPPQEGLPLTLIIKRTDIKLDFWQTLMNREPTVEHVAFEGVQIALDLDA 129

Query: 126 IDWLALEQ-----NPNPKQSRQGRVVKQLDDLLLRQLDDFTLKNSAILYRTFAGDLRQLD 180
           +     ++     N   +     RV+  L  LLL QL  F L ++ +  ++   D R + 
Sbjct: 130 MGGSGPQESVPVSNDTTRVKETTRVIDWLSPLLLEQLQQFALTDATVQLKSKYHDFRPIY 189

Query: 181 IEKLRWQNQGLRHFAEGVVSI---AGININSLLVSANFIDHGSLRD-VSGDFYVSADKVR 236
           +  LRW N   RH AEG V +   A ++   L +  +F   GS  + + G  Y++A  + 
Sbjct: 190 VGDLRWLNLDGRHRAEGYVYLDDRASVS-ERLSLQIDFKGDGSQPESIHGQLYLAARALD 248

Query: 237 VLPWLTRYLKDQTGIQK----GQVSLNAWATLEHNQPKDGYVEFKPSELVWQNGEQTHEL 292
           +  W  R        +     G V+  AWA + +       V+F PS + W   E     
Sbjct: 249 LGEWAARQPNPFNEAEPLPLAGVVNFEAWADVANLSLMSALVQFSPSYVQWPGLENQQRF 308

Query: 293 LLESGIVELKPTEKGWQVNAHSLRLRSDDELWPLLDVAMDWQPDEWRLNLSQLNIENLLP 352
            ++ G +  +   +GW   +  L L+S+  LWP   +A  +   E +  L  L++  L P
Sbjct: 309 AVDGGSLVWQRHGRGWLFGSDKLVLKSNGTLWPETGMAAMYDGVELKAKLDALDLGALSP 368

Query: 353 LAKLIPESQTLN--HWLTTLKPKGTLEDVRI--------AKGATLESLRYSASLIDGGIA 402
           L  LIP   T++    L  L P+G L+D+R+        A+  +   L  SA     G  
Sbjct: 369 LVPLIP-GLTIDGLKTLLALHPQGQLQDMRLHHKALPGTAEQESARQLAISAGFSGLGWQ 427

Query: 403 QWELLPQVNALQAQI--QGSPSKALIKASMVDDVLPYG-EVFQAPLNIRQGAVNLVWQQE 459
           Q   +P +  L A +   G   +A + A  ++  + +G + F+APL      + L +   
Sbjct: 428 QVSHIPGLKQLDASVFFDGELLRASLPAQTLE--VDFGTQAFKAPLVFHTPGIELGYDLS 485

Query: 460 QYGWSLWSDKVTVATPDLQALGAFRLDFPDDASPFLSFYAEADLFNAGETWRYLPTLALG 519
           +   +L +  V +  PDL    A ++ F       LS  A  ++ +A     Y P  A+G
Sbjct: 486 EN--ALLAPSVQLENPDLAVDAAMKMVFSQPTHLALS--AGVEVRDAARAGYYFPRAAMG 541

Query: 520 RELTDYLSTAIQAGQVNTAKLIWYGALDQFPYRMHNGVFQAWVGLKEAKFAFDTAWPPIT 579
            +L DYL  AI AG+   A ++W GAL  FPYR ++G+FQA   + EA +AF   WP +T
Sbjct: 542 SDLADYLEGAIIAGRTRDAAVVWNGALQDFPYRDNSGIFQAGFVMDEANYAFQPDWPAVT 601

Query: 580 DLQLDLLFENDAMYLDSRSATLMEVSAERITGRIPELAELGHIEIEAVASAQQGNAIRNY 639
           +L L  LFEN  M +      L  V+A      IPE++    + +EA A A  G A    
Sbjct: 602 ELSLRALFENLRMDIWVDEGKLRAVNAAGAHVYIPEMSHETVLHVEA-ALATTGPAATAV 660

Query: 640 MMATPLVDSVGAALTTIQVKGPVRSEFQLNIPFHSGAEPRAWGFAELSNNAVDIDTPPMS 699
           + A+PL  SVGA L  ++V+G V+ +  L IP + G +P   G     +  V +DTP + 
Sbjct: 661 LQASPLKHSVGAVLDVVKVQGAVKGDLDLVIPLYHGGKPDIQGLVLFDDTPVYLDTPGVQ 720

Query: 700 LTSVSGKIEFDNDRVSAAGLDARLLKQPVSIDFKGEDAKRGYAVGIDMVGDWEVKPLIPF 759
           L  + G++ F NDR+ A GL ARL  QP+S+D  G D  +GY V   +   W++  L P 
Sbjct: 721 LNRLKGELRFANDRIEAEGLSARLFGQPLSLDVFGADDAKGYKVDTTLKSGWDLASLPPS 780

Query: 760 VGERWLSRVKGHAPWQASVDIQLNDV-GFTYQLDGKADLRGLESRYPFPLKKALKVKGQA 818
           +         G   WQ S+ + L    GF  + + ++ LR  E + P P  K++ V    
Sbjct: 781 LDNPLSDFYAGVLAWQGSLGLTLPRAGGFNIEAEAESSLRNAELKLPPPFAKSVGVPMPL 840

Query: 819 LLQASGNQE 827
            L   GN E
Sbjct: 841 KLTLQGNGE 849



 Score =  203 bits (517), Expect = 8e-56
 Identities = 133/459 (28%), Positives = 225/459 (49%), Gaps = 36/459 (7%)

Query: 848  PKVPVLKATNLVLGQGSFKISPVVGH-HVQLRSQAFNLDDWLSIL-----NEKPAPKSRK 901
            P VP   + + V        S   G   V LR  +FN  DWL I+     +    P S  
Sbjct: 946  PTVPQSASVSAVTSLAQSSRSAAGGRLDVTLRQASFN--DWLPIIIGFVDSSTAVPASDN 1003

Query: 902  SKLAS---------LNTPAFPMPERVDAAVKELTFAGLDWHDVDLNARRKDLGWLLNLDS 952
            ++  S          +T  FP  E + A + +LT  G    D  + AR +D  W ++  +
Sbjct: 1004 AQQVSPEALVNPEPQSTGFFPKLEGIFADIGQLTLFGQSLADAQIFARPEDGLWRVSTYA 1063

Query: 953  QEIKGQANYIEPYD---LSIALERLHLFLPQLEAGEEALLVDLDRQKLPLITDFDRKFHQ 1009
             E  G  +    +    + +   +L+L     EA  EA ++             D +F  
Sbjct: 1064 NEFSGDIDLFPDWHRGGIKLRASKLYLSPEFTEAEAEAKVLG------------DEQFSS 1111

Query: 1010 WMPNLTLTIKDFWLQGYKIGQANVDFQRQGDTLLWKSIDFTSGTNQLHVNGTWTLTDTQS 1069
             +P + + + DF L    +G   +  Q +     ++++  +SG   L   G W +   Q+
Sbjct: 1112 NLPPIAVDVDDFRLYDRALGHLVLQGQPEPGRYNFQTLSLSSGAATLKGQGGWLMDVNQT 1171

Query: 1070 RTQMNLDMKGDNNSDLMARFGINSGIQRAPFEITASTQWDGAPWSMQVNTLQGKVDTKLG 1129
            R  M   +K D    L  + GI  GI+ +P +I+A   W GAP    + +L G +   LG
Sbjct: 1172 R--MEFSLKADKFDALAQQLGITPGIKDSPLDISAELFWQGAPHEFDLGSLSGGLKFALG 1229

Query: 1130 KGVISDVSG-AARLLGLFSLDSIIRKMQLDFSDVFDKGMAFDSISGSGELSQGIFVTNNI 1188
            KG ++++S   AR+  LFSLDS++RK+ LDF+DVF KGM ++S +G+ EL  G+  T + 
Sbjct: 1230 KGSLTEISDKGARIFSLFSLDSLLRKLSLDFTDVFGKGMFYNSFAGTLELDNGVVKTRDT 1289

Query: 1189 KMDAVAGEMTIKGLADLNTRTVDAEVNFVPDITSGIPVLTAFAVTPQT-ALYVLAITTVI 1247
            +MDA+AG M ++G  DL T++++ ++ FVP + S +P +   + +  T  L   A+T V+
Sbjct: 1290 EMDAIAGNMKVRGFTDLTTQSLNYDIRFVPQLASSVPTVVLLSTSAWTMGLGAFALTKVL 1349

Query: 1248 SPVVEVFTQVNYEVKGPLDSPTVKELSRSKGEFKLPEKL 1286
             PV+EV +++ + + G +  P ++EL R   E ++PE +
Sbjct: 1350 EPVIEVISEIRFRLSGTMTDPMLEELERKSKEIEIPESV 1388