Pairwise Alignments

Query, 1291 a.a., DUF3971 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1436 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score =  511 bits (1316), Expect = e-148
 Identities = 356/1320 (26%), Positives = 628/1320 (47%), Gaps = 71/1320 (5%)

Query: 12   LMWLLVSLLIVL-ALAVTALRILLPQMNRFQAEIQHWLNQNSSVQVAIADVQGYWRNTHP 70
            L W ++++++VL AL+V+  R LLP++++ + E+  ++ +   V+V ++++   W+   P
Sbjct: 13   LCWQMIAIIVVLFALSVSLFRGLLPKLDQVRQELVSYIYEQYQVKVEVSELTAEWQAFGP 72

Query: 71   SLSLQTLQAHWPDSNDIQLNAASVEIEFDLLQSLWQRQPVVADLTVNGLVLDLRAIDWLA 130
            +++++ L     ++  +     +V ++ D   SL    P + ++   G+ +   A+D   
Sbjct: 73   AVTIKNLVLPVQENLPVTFIIDNVHLKLDFWDSLVSASPQIENVIFEGVKI---ALDLDR 129

Query: 131  LEQNPNPKQSRQGRVVKQLDD----LLLRQLDDFTLKNSAILYRTFAGDLRQLDIEKLRW 186
            + Q  N +QS    V +Q  D    L+L Q D F + +  +   +     R + I  LRW
Sbjct: 130  ISQAGNGQQSSDAPVAEQNTDWLYALMLEQFDRFAITDVTMQLISSTHKYRPIHIRDLRW 189

Query: 187  QNQGLRHFAEGVVSI----AGININSLLVSANFIDHGSLRDVSGDFYVSADKVRVLPWLT 242
            +N   RH AEG + +    + +   SL V      H     ++G  Y++A+ + +  W +
Sbjct: 190  RNLAGRHRAEGALFLDEQASEVERLSLAVDIRGDGHNP-ESLTGQLYLAANSLDLGEWAS 248

Query: 243  R----YLKDQTGIQKGQVSLNAWATLEHNQPKDGYVEFKPSELVWQNGEQTHELLLESGI 298
            R    Y   +    +G V+L AWA   +       V F+PS L WQ   +  +  +++G 
Sbjct: 249  RQENPYASGKKLPLEGVVNLQAWAEFSNRAFTAATVAFEPSWLQWQLKGEQQKFEIKAGQ 308

Query: 299  VELKPTEKGWQVNAHSLRLRSDDELWPLLDVAMDWQPDEWRLNLSQLNIENLLPLAKLIP 358
            +  +P   GWQ+ +  L   ++ + WP L +    + D    +++QL+ E LLPL  L+P
Sbjct: 309  LNWQPQVSGWQLTSSDLAFVTNGQAWPALHIGARKRDDRLMASINQLDAEVLLPLLPLVP 368

Query: 359  ESQTLNHWL-TTLKPKGTLEDVRIAKGATLESLRYSASLIDGGIAQWELLPQVNALQAQI 417
                   +L  ++ PKG++E +++  G   +    SA L          +P    +   +
Sbjct: 369  GMDLDGLYLWQSMDPKGSIEQLKLGYGEQ-QGFALSAQLKQFAWQGSGAIPGAEPIDLML 427

Query: 418  QGSPSKALIKASMVDDVLPYGEVFQAPLNIRQGAVNLVWQQEQYGWSLWSDKVTVATPDL 477
                S   + A      L +   F+  L++   A  + +   +    L + K+     DL
Sbjct: 428  GMQGSDLYLSAPAQQYHLDFNGGFEEALSLAGDAFTVKYALGEA--ELIAPKLHFYNADL 485

Query: 478  QALGAFRLDFPDDASPFLSFYAEADLFNAGETWRYLPTLALGRELTDYLSTAIQAGQVNT 537
                A +LDF  +AS  L+  A+  + NA     Y P  A+   L DYLS AI+AGQ   
Sbjct: 486  DLDAAMKLDFAGEAS--LNLLADVQVKNAARAKYYFPKHAMSESLVDYLSGAIKAGQSQD 543

Query: 538  AKLIWYGALDQFPYRMHNGVFQAWVGLKEAKFAFDTAWPPITDLQLDLLFENDAMYLDSR 597
            AK++W G L  FPY  ++GVFQA   L +A++ F   WP +T+L L+ LFEN AM +   
Sbjct: 544  AKVVWNGPLKHFPYDDNSGVFQAGFSLNQARYRFQPDWPEVTELSLNALFENAAMDIWVN 603

Query: 598  SATLMEVSAERITGRIPELAELGHIEIEAVASAQQGNAIRNYMMATPLVDSVGAALTTIQ 657
               LM+V A+     IP ++    + ++A    Q G A +  +  +PL D+VGA L  +Q
Sbjct: 604  KGMLMQVPADGAHVAIPRMSHQTLLTVKADLRTQ-GEAAKQVLQRSPLADTVGATLEVVQ 662

Query: 658  VKGPVRSEFQLNIPFHSGAEPRAWGFAELSNNAVDIDTPPMSLTSVSGKIEFDNDRVSAA 717
            V+G V  +  L+IP + G +    G  +  N  V I  P + L  V+G++ F N+ V+  
Sbjct: 663  VQGEVSGKLDLSIPLYHGGKEAILGQVKFDNTPVYISEPGVQLDGVTGEVYFANEVVTGE 722

Query: 718  GLDARLLKQPVSIDFKGEDAKRGYAVGIDMVGDWEVKPLIPFVGERWLSRVKGHAPWQAS 777
             + ARL +QPVS  F      + Y + +DM G W +  L   +         G   WQ +
Sbjct: 723  KIQARLFEQPVSFTFDTGKTNKHYGLNLDMQGQWALASLPAMLDNPLKDYYSGELDWQGA 782

Query: 778  VDIQLNDVGFTYQLDGKADLRGLESRYPFPLKKALKVKGQALLQASGNQEMVSARLQL-P 836
            + +  +++G+  Q   K+D++G+E   P    K          +  G+ +  S   +L  
Sbjct: 783  MTLIFDELGYRIQAQVKSDMQGVELSLPGKFAKTADSPRALSFELIGDNKQASLGAKLGD 842

Query: 837  QAKYQAEIDLTPKVPVLKATNLVLGQGSFKISPVV---GHHVQLRSQAFNLDDWLSI--- 890
            Q ++    D       L   +L+LG+  FK    +     H+QL   A     WL I   
Sbjct: 843  QMEFWGGFD-EESGDHLAHFDLLLGR-LFKPGDQLKRQAGHLQLDMPATEFAPWLPIIKG 900

Query: 891  --------------LNEKPAPKSRKSKLASLNTPA-----FPMPERVDAAVKELTFAGLD 931
                          + E  A ++ +S L    T       FP    VD  V++L   G  
Sbjct: 901  FMGDAALESSLDLAMREALAEQAPESPLVQAETEPKKSSFFPPLIAVDGQVRQLNLYGQP 960

Query: 932  WHDVDLNARRKDLGWLLNLDSQEIKGQANYIEPYD---LSIALERLHLFLPQLEAGEEAL 988
              +++L A   + GW    ++ E  G+ ++   +    L +   R + F P+ + GE + 
Sbjct: 961  LTELNLEAHPTEHGWRFEGNANEFSGRVDFYPDWSTQGLKLVASRFN-FAPESKEGEASE 1019

Query: 989  LVDLDRQKLPLITDFDRKFHQWMPNLTLTIKDFWLQGYKIGQANVDFQRQGDTLLWKSID 1048
            +   +   +             +P L + +  F + G  +G   +    +      ++I 
Sbjct: 1020 VASDEVLSI-------------LPPLAVDVDQFSVYGKPLGHLVLQATPKNGDYQIQTIA 1066

Query: 1049 FTSGTNQLHVNGTWTLTDTQSRTQMNLDMKGDNNSDLMARFGINSGIQRAPFEITASTQW 1108
             T+    L   G W+ ++ Q+ T+  +D+K     ++  R GI+ G++ AP ++ A   W
Sbjct: 1067 ITTPGITLKGKGAWSNSEGQNLTEFQVDLKAKQFDEVSERLGIDPGLKEAPLDLQAELSW 1126

Query: 1109 DGAPWSMQVNTLQGKVDTKLGKGVISDVSG-AARLLGLFSLDSIIRKMQLDFSDVFDKGM 1167
             GAP++  + TL G++  KLGKG +S+VS   AR+  LFSLDS++RK+ LDFSDVF KG+
Sbjct: 1127 QGAPYAFSLETLNGQISYKLGKGHLSEVSDKGARIFSLFSLDSLLRKLSLDFSDVFGKGL 1186

Query: 1168 AFDSISGSGELSQGIFVTNNIKMDAVAGEMTIKGLADLNTRTVDAEVNFVPDITSGIPVL 1227
             F++ +G+ +L  G+  T + +MDAVAG M ++G  DL T +++ ++ FVP + S +P +
Sbjct: 1187 YFNAFTGTLKLDNGVVKTTDSEMDAVAGNMRVRGYTDLTTESLNYDIRFVPQLASSVPTV 1246

Query: 1228 TAFAVTPQT-ALYVLAITTVISPVVEVFTQVNYEVKGPLDSPTVKELSRSKGEFKLPEKL 1286
               +    T  L   A+T V+ PV+EV +++ + + G +  P ++EL R   E ++PE +
Sbjct: 1247 VLLSTGGWTLGLGAFALTKVLEPVIEVISEIRFRLTGTMSEPKLEELERKSKEIEIPESV 1306