Pairwise Alignments

Query, 1291 a.a., DUF3971 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1390 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  532 bits (1370), Expect = e-155
 Identities = 359/1306 (27%), Positives = 630/1306 (48%), Gaps = 49/1306 (3%)

Query: 4    TVTRLGRILMWLLVSLLIVLALAVTALRILLPQMNRFQAEIQHWLNQNSSVQVAIADVQG 63
            T  +L R    LL  +L++ AL V+ +R LLPQ++  + ++  ++     + + + ++  
Sbjct: 6    TAKKLSRFCWQLLALILVLFALTVSLIRGLLPQVDEVRQQLVEYVKSEYQINIQVGELSA 65

Query: 64   YWRNTHPSLSLQTLQAHWPDSNDIQLNAASVEIEFDLLQSLWQRQPVVADLTVNGLVLDL 123
             W+   P++++  L     +   + +    V+I+ D  QSL    P + D+   G+ +  
Sbjct: 66   QWQAFGPAVTIDDLVIPPQEKLPVTVLVKQVQIKLDFWQSLLTTSPRIEDVNFEGVHI-- 123

Query: 124  RAIDWLALEQNPNPKQSRQGRVVKQLDDLLLRQLDDFTLKNSAILYRTFAGDLRQLDIEK 183
             A+D   L      + S Q      L  LLL+QL+ F+L+++++   +   + R + I  
Sbjct: 124  -ALDMDKLSGRTTGRVSGQSTQTDWLYILLLKQLERFSLEDASVQLLSLHNEYRPIHIRH 182

Query: 184  LRWQNQGLRHFAEGVVSIAGINI--NSLLVSANFIDHGSLRD-VSGDFYVSADKVRVLPW 240
            L W+N G++H   G + +    +   SL +  +     +  D + G  Y++A  + +  W
Sbjct: 183  LNWRNSGMQHRGAGEIYLDNNAMVKESLSLQLDITGDATAPDTLKGQIYLAAQSLDLGEW 242

Query: 241  LTRYLKDQTGIQK----GQVSLNAWATLEHNQPKDGYVEFKPSELVWQNGEQTHELLLES 296
             +R        +K    G V+L AW  + H   + G V+F+PS L W    Q  +  ++S
Sbjct: 243  ASRQPNPYDPSKKLPLEGIVNLKAWFDVAHRSIRSGLVQFEPSWLQWSMQGQPQKFEIQS 302

Query: 297  GIVELKPTEKGWQVNAHSLRLRSDDELWPLLDVAMDWQPDEWRLNLSQLNIENLLPLAKL 356
            G +  +P   GW++++  L   ++ E WP L +A   Q D     +S++++  L PL  L
Sbjct: 303  GSIRWEPKATGWEISSADLDFVTNGEHWPELKLAAKQQDDALYAYVSRVDLPTLFPLLPL 362

Query: 357  IP--ESQTLNHWLTTLKPKGTLEDVRIAKGATLESLRYSASLIDGGIAQWELLPQVNALQ 414
             P  +   L  W   L P+G++  +R+ + A  + L  S S+      + E +P    L 
Sbjct: 363  FPGVDLAVLKQWFH-LAPEGSVGPIRLYQAAD-QPLLASTSVTQLHWQKVEGIPNTQPLD 420

Query: 415  AQIQGSPSKALIKASMVDDVLPYGEVFQAPLNIRQGAVNLVWQQEQYGWSLWSDKVTVAT 474
             ++Q      +         L +G+ F APL + QGA  L    +    +L    V +A 
Sbjct: 421  LKLQWQDETLVFSLPEQTYTLDFGDEFSAPL-VLQGA-ELTGAFDTKRATLSMPHVQLAN 478

Query: 475  PDLQALGAFRLDFPDDASPFLSFYAEADLFNAGETWRYLPTLALGRELTDYLSTAIQAGQ 534
             D+    A +LDF   AS  +S  A   + NA    +Y P  A+G  L +YL  AI+AGQ
Sbjct: 479  DDIGLSAALKLDFSTAAS--MSLAANVAVKNAANADKYFPIKAMGESLAEYLDGAIKAGQ 536

Query: 535  VNTAKLIWYGALDQFPYRMHNGVFQAWVGLKEAKFAFDTAWPPITDLQLDLLFENDAMYL 594
               A+++W GAL  FP+  ++GVFQA   L  A++ F   WP +TDL LD LFEN  M +
Sbjct: 537  SQNAQVLWQGALSSFPFEDNSGVFQAAFTLNNAEYQFQPDWPAVTDLSLDALFENARMDI 596

Query: 595  DSRSATLMEVSAERITGRIPELAELGHIEIEAVASAQQGNAIRNYMMATPLVDSVGAALT 654
                  LM V A+     IPEL E   ++I+A      G+A    + A+PL D+VG  L 
Sbjct: 597  WVNQGKLMNVVADGAHVFIPELGERSLLKIQA-DLVTDGSAATKVLQASPLADTVGETLK 655

Query: 655  TIQVKGPVRSEFQLNIPFHSGAEPRAWGFAELSNNAVDIDTPPMSLTSVSGKIEFDNDRV 714
             +QV+G V     ++IP + G      G     N  V I  P + L +V+G ++F N+ V
Sbjct: 656  VVQVQGAVAGNLDISIPLYEGEAEDIRGQIVFDNTPVFIAQPGLQLKAVTGTVQFANEVV 715

Query: 715  SAAGLDARLLKQPVSIDFKGEDAKRGYAVGIDMVGDWEVKPLIPFVGERWLSRVKGHAPW 774
               G+ +RL +QP+   F  +   + + + +DM   W++  L   +        +G   W
Sbjct: 716  EGQGIKSRLFEQPLEFSFATKPEGKDFTLNLDMKSRWDLSRLPQELHNPLSGFYQGKVAW 775

Query: 775  QASVDIQLNDVGFTYQLDGKADLRGLESRYPFPLKKALKVKGQALLQASGNQEMVSARLQ 834
              ++ +  ++ G+  Q +  +DL G   + P    K        + + SG+Q+    R++
Sbjct: 776  GGNLSMVFDEQGYQIQANLGSDLVGATLKLPGVFAKPTDEPRPLMAEFSGDQQAAILRVK 835

Query: 835  L-PQAKYQAEIDLTPKVPVLKATNLVLGQGSFKISPVVG---HHVQLRSQAFNLDDWLSI 890
            L  QA++    +   K       +L+LG+  F+ + V      H+ +   +  L  WL +
Sbjct: 836  LDKQAEFIGGFE-AEKGTQFSYFDLLLGR-LFEATEVPNTELGHINIDVTSGKLAHWLPV 893

Query: 891  LNEKPAPKSRKSKLASL-----NTPAFPMPERVDAAVKELTFAGLDWHDVDLNARRKDLG 945
            +N      ++  +   L     ++  FP    +DA + +    G    D+ L+A   D G
Sbjct: 894  INAFIGTDNKPVRTGILVEKANHSALFPAVVGIDANIGKFDLLGQGLTDLRLSANPNDNG 953

Query: 946  WLLNLDSQEIKGQANYIEPY---DLSIALERLHLFLPQLEAGEEALLVDLDRQKLPLITD 1002
            W  +  + E +G  ++   +    L +A  + + F P++++  EA     D     ++T+
Sbjct: 954  WRFDAKASEFEGTIDFYPNWMTQGLKVAASKFY-FSPEVKSEGEA-----DFAADQVLTN 1007

Query: 1003 FDRKFHQWMPNLTLTIKDFWLQGYKIGQANVDFQRQGDTLLWKSIDFTSGTNQLHVNGTW 1062
                    +P + + + DF       G+  V    Q      +++  T+    L  NG W
Sbjct: 1008 --------LPPVAVNVDDFRFFDKSFGKLVVQASPQASGYRIQTLSLTTPEVSLQGNGIW 1059

Query: 1063 TLTDTQSRTQMNLDMKGDNNSDLMARFGINSGIQRAPFEITASTQWDGAPWSMQVNTLQG 1122
               + Q++T++++ +       L  + GIN G+  AP ++ A   W GAP++  + TL G
Sbjct: 1060 QQQNGQNQTELSVSLNASQFHHLSDQLGINPGVDEAPLKVNADLAWQGAPYAFSLETLNG 1119

Query: 1123 KVDTKLGKGVISDVSG-AARLLGLFSLDSIIRKMQLDFSDVFDKGMAFDSISGSGELSQG 1181
            KV  +LGKG +S VS   AR+  LFSLDS++RK+ LDFSDVF +GM F+S +G+ ++  G
Sbjct: 1120 KVKFELGKGHLSQVSDKGARIFSLFSLDSLVRKLSLDFSDVFGQGMYFNSFTGNLQIDNG 1179

Query: 1182 IFVTNNIKMDAVAGEMTIKGLADLNTRTVDAEVNFVPDITSGIPVLTAFAVTPQT-ALYV 1240
            +  T + +MDA+AG M ++G  DL T +++ ++ FVP + S +P +   + +  T  L  
Sbjct: 1180 VVKTTDTEMDAIAGNMKVRGYTDLTTESLNYDIRFVPQLASSVPTVVLLSTSAWTLGLGA 1239

Query: 1241 LAITTVISPVVEVFTQVNYEVKGPLDSPTVKELSRSKGEFKLPEKL 1286
             A+T V+ PV+EV +++ + VKG +  P V+EL R   E ++PE +
Sbjct: 1240 FALTKVLEPVIEVISEIRFRVKGTMSEPVVEELERKSKEIEIPESI 1285