Pairwise Alignments

Query, 489 a.a., ribonuclease E/G from Vibrio cholerae E7946 ATCC 55056

Subject, 1187 a.a., Ribonuclease E (EC 3.1.26.12) from Xanthomonas campestris pv. campestris strain 8004

 Score =  306 bits (785), Expect = 2e-87
 Identities = 177/489 (36%), Positives = 287/489 (58%), Gaps = 10/489 (2%)

Query: 5   LLLNVTPSET-RVAMIEGGILQEIHIEREAKRGIVGNIYKGKVSRVLPGMQAAFVDIGLD 63
           +L+N T +E  RVA+++G  L +I IE+ +K     NIYKG+++R+ P ++AAFVD G +
Sbjct: 4   MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAE 63

Query: 64  KAAFLHASDIV-PHTECVAESEKQQFQVRDISELVRQGQDIVVQVVKDPLGTKGARLTTD 122
           +  FL   +I   + +   +  K       I EL+R+GQ++VVQV K+  G KGA LTT 
Sbjct: 64  RHGFLPLKEISRDYFQAGVDHNKST-----IRELLREGQEVVVQVDKEERGNKGAALTTF 118

Query: 123 ITLPSRYLVFMPGA-SHVGVSQRIESEAERERLKKIVSHY-CDEHGGFIIRTAAEGANEK 180
           I+L  RY+V MP + S  GVS+RIE E +R  LK  +      +  G IIRTA  G + +
Sbjct: 119 ISLAGRYMVLMPNSPSAGGVSRRIEGE-DRAALKDALDKLDIPDDMGVIIRTAGVGRDAE 177

Query: 181 ELTQDAAFLKRLWSKVIERRSKYKNRSMLYGELGLAQRILRDFVGTELTKILIDSRQEFE 240
           EL  D  +L + W  + E         ++Y E  L  R LRD++  ++ +IL+D+ + + 
Sbjct: 178 ELQWDLDYLLQTWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADIGEILVDTPELYA 237

Query: 241 NLKEFTSEYVPELTAKLELYHGDKPIFDMYDTENEIQRSLERKVELKSGGYLIIDQTEAM 300
           + +EF  + +P+   KL+ Y  D P+F+ +  E++I+ + ER V L SGG +++DQTEA+
Sbjct: 238 DAQEFMQQVMPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEAL 297

Query: 301 TTIDINTGAFVGRRNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMASDEHRKRV 360
           T +D+N+       ++EET F TN+EA + +ARQLRLR+LGG+++IDFIDMAS +H++ V
Sbjct: 298 TAVDVNSSRATKGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASTKHQREV 357

Query: 361 LTSLETALMKDRVKTNINGFTQLGLVEMTRKRTRESIEHVLCSTCPTCEGRGSVKTVETV 420
              L+ AL  DR +  +   ++ GL+EM+R+R R S+       CP C+G G +++VE++
Sbjct: 358 ENKLQNALKYDRARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESL 417

Query: 421 CFEILREITRVNRAYDADKFVVYASPAVADTLQGEESHALAELEVFIGKEVRIQAEPLYN 480
              I+R         +  + +V A   +A+ L  E+  AL E+E      + I A+   +
Sbjct: 418 SLSIIRVAEEHAMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHESPIIIVADEQLH 477

Query: 481 QEQFDVVMM 489
              ++V  +
Sbjct: 478 TPHYEVTRL 486