Pairwise Alignments

Query, 489 a.a., ribonuclease E/G from Vibrio cholerae E7946 ATCC 55056

Subject, 1141 a.a., ribonuclease E (RefSeq) from Shewanella amazonensis SB2B

 Score =  286 bits (732), Expect = 3e-81
 Identities = 174/487 (35%), Positives = 271/487 (55%), Gaps = 9/487 (1%)

Query: 5   LLLNVTPSET-RVAMIEGGILQEIHIEREAKRGIVGNIYKGKVSRVLPGMQAAFVDIGLD 63
           +L+N T SE  RVA+++G  L ++ IE         NIYKGK++RV P ++AAFVD G +
Sbjct: 31  MLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAE 90

Query: 64  KAAFLHASDIVPHTECVAESEKQQFQVR-DISELVRQGQDIVVQVVKDPLGTKGARLTTD 122
           +  FL   +I         S    FQ R +I E+V +GQ+++VQ+ K+  G KGA LTT 
Sbjct: 91  RHGFLPLKEIAREYFPKGYS----FQGRPNIKEVVSEGQEVIVQIDKEERGNKGAALTTF 146

Query: 123 ITLPSRYLVFMPGASHVG-VSQRIESEAERERLKKIVSHYCDEHG-GFIIRTAAEGANEK 180
           I+L   YLV MP     G +S+RIE + ER  LK+ ++     +G G I+RTA  G +  
Sbjct: 147 ISLAGSYLVLMPNNPRAGGISRRIEGD-ERTELKEAMADLEVPNGMGLIVRTAGVGKDAA 205

Query: 181 ELTQDAAFLKRLWSKVIERRSKYKNRSMLYGELGLAQRILRDFVGTELTKILIDSRQEFE 240
           EL  D   L R W  + E         +++ E  +  R +RD++  ++ +ILID  + FE
Sbjct: 206 ELQWDLKVLLRHWDAIKEASESGPGPMLIHQESNVIVRAIRDYLRRDVGEILIDHPKIFE 265

Query: 241 NLKEFTSEYVPELTAKLELYHGDKPIFDMYDTENEIQRSLERKVELKSGGYLIIDQTEAM 300
             K+  +   P+   +++ Y  + P+F  Y  E++I+ + +R+V L SGG ++ID TEAM
Sbjct: 266 QAKQHIATVRPDFVERVKQYKAEVPLFTHYQIESQIESAFQREVRLPSGGSIVIDPTEAM 325

Query: 301 TTIDINTGAFVGRRNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMASDEHRKRV 360
           T+IDIN+       ++EET  NTN+EA   IARQLRLR+LGG+I+IDFIDM    H++ V
Sbjct: 326 TSIDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREV 385

Query: 361 LTSLETALMKDRVKTNINGFTQLGLVEMTRKRTRESIEHVLCSTCPTCEGRGSVKTVETV 420
              L  A+ +DR +  +   ++ GL+EM+R+R R S+E      CP C G+G+++  E++
Sbjct: 386 ENRLRDAVHQDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHICPRCHGQGTIRGTESL 445

Query: 421 CFEILREITRVNRAYDADKFVVYASPAVADTLQGEESHALAELEVFIGKEVRIQAEPLYN 480
              ILR +       +  +        VA  L  E+  A+  +E     EV +  +P   
Sbjct: 446 ALSILRLMEEEAIKDNTSQVEAIVPVDVAAFLLNEKRKAIRIIEQRHEVEVYVIPDPHMM 505

Query: 481 QEQFDVV 487
             ++ V+
Sbjct: 506 TPEYKVI 512