Pairwise Alignments

Query, 489 a.a., ribonuclease E/G from Vibrio cholerae E7946 ATCC 55056

Subject, 1088 a.a., ribonuclease E (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  282 bits (722), Expect = 4e-80
 Identities = 170/477 (35%), Positives = 266/477 (55%), Gaps = 9/477 (1%)

Query: 5   LLLNVTPSET-RVAMIEGGILQEIHIEREAKRGIVGNIYKGKVSRVLPGMQAAFVDIGLD 63
           +L+N T SE  RVA+++G  L ++ IE         NIYKGK++RV P ++AAFVD G +
Sbjct: 4   MLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAE 63

Query: 64  KAAFLHASDIVPHTECVAESEKQQFQVR-DISELVRQGQDIVVQVVKDPLGTKGARLTTD 122
           +  FL   +I         S    FQ R +I E+V +GQ+++VQ+ K+  G KGA LTT 
Sbjct: 64  RHGFLPLKEIAREYFPKGYS----FQGRPNIKEVVSEGQEVIVQIDKEERGNKGAALTTF 119

Query: 123 ITLPSRYLVFMPGASHVG-VSQRIESEAERERLKKIVSHYCDEHG-GFIIRTAAEGANEK 180
           I+L   YLV MP     G +S+RIE + ER  LK+ ++      G G I+RTA  G    
Sbjct: 120 ISLAGSYLVLMPNNPRAGGISRRIEGD-ERTELKEAMADLEVPAGMGLIVRTAGVGKEST 178

Query: 181 ELTQDAAFLKRLWSKVIERRSKYKNRSMLYGELGLAQRILRDFVGTELTKILIDSRQEFE 240
           EL  D   L+  W+ + E         +++ E  +  R +RD++  ++ +ILID  + +E
Sbjct: 179 ELKWDLKVLQHHWAAITEAAQTKGAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIYE 238

Query: 241 NLKEFTSEYVPELTAKLELYHGDKPIFDMYDTENEIQRSLERKVELKSGGYLIIDQTEAM 300
             K+  +   P+   +++LY  + P+F  Y  E++I+ + +R+V L SGG ++ID TEA+
Sbjct: 239 EAKQHIALVRPDFVERVKLYEAEVPLFTHYQIESQIESAFQREVRLPSGGSIVIDPTEAL 298

Query: 301 TTIDINTGAFVGRRNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMASDEHRKRV 360
           T+IDIN+       ++EET  NTN+EA   IARQLRLR+LGG+++IDFIDM    H++ V
Sbjct: 299 TSIDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREV 358

Query: 361 LTSLETALMKDRVKTNINGFTQLGLVEMTRKRTRESIEHVLCSTCPTCEGRGSVKTVETV 420
              L  A+  DR +  +   ++ GL+EM+R+R R S+E      CP C G+G++++ E++
Sbjct: 359 ENRLRDAVHHDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHICPRCHGQGTIRSTESL 418

Query: 421 CFEILREITRVNRAYDADKFVVYASPAVADTLQGEESHALAELEVFIGKEVRIQAEP 477
              ILR +       +  +        VA  L  E+  A+   E     EV +  +P
Sbjct: 419 ALSILRLMEEEAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEQRHDVEVYVIPDP 475