Pairwise Alignments

Query, 489 a.a., ribonuclease E/G from Vibrio cholerae E7946 ATCC 55056

Subject, 1026 a.a., ribonuclease, Rne/Rng family (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  225 bits (574), Expect = 5e-63
 Identities = 132/404 (32%), Positives = 220/404 (54%), Gaps = 6/404 (1%)

Query: 78  ECVAESEKQQFQVRD----ISELVRQGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFM 133
           E VAE  ++  Q R+    I E+++  Q ++VQVVK+  G KGA LTT ++L  RY V M
Sbjct: 339 EDVAEEIRRPRQRRERRYKIQEVIKVRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLM 398

Query: 134 PGASHVG-VSQRIESEAERERLKKIVSHYCDEHG-GFIIRTAAEGANEKELTQDAAFLKR 191
           P  +  G +S++I +  +R++LK+I S      G G I+RTA     + E+ +D  +LKR
Sbjct: 399 PNTARGGGISRKITNAVDRKKLKEIASEIEVPRGAGLIVRTAGAKRTKTEIKRDYDYLKR 458

Query: 192 LWSKVIERRSKYKNRSMLYGELGLAQRILRDFVGTELTKILIDSRQEFENLKEFTSEYVP 251
           LW ++ +   K    + +Y E  L +R +RD    ++ ++L++  + +   K+F    +P
Sbjct: 459 LWEQIRDLTLKSIAPAPIYEEGNLIKRSIRDLYSRDIDEVLVEGEEGYRVAKDFMKMLMP 518

Query: 252 ELTAKLELYHGDKPIFDMYDTENEIQRSLERKVELKSGGYLIIDQTEAMTTIDINTGAFV 311
                ++LY+ + P+F  Y  E+ +       V+LKSGGYL+I  TEA+  ID+N+G   
Sbjct: 519 SHAKNVKLYNENLPLFARYQVESYLAGMFNPTVQLKSGGYLVIGVTEALVAIDVNSGRAT 578

Query: 312 GRRNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMASDEHRKRVLTSLETALMKD 371
              ++EET   TN+EA + +ARQ+RLR+L G+I+IDFIDM    +   V   L+  L  D
Sbjct: 579 KEGSIEETALKTNLEAAEEVARQVRLRDLAGLIVIDFIDMEERRNNTAVEKRLKDKLKTD 638

Query: 372 RVKTNINGFTQLGLVEMTRKRTRESIEHVLCSTCPTCEGRGSVKTVETVCFEILREITRV 431
           R +  +   +  GL+EM+R+R R  +  +    C  C G G +++  ++   I+R +   
Sbjct: 639 RARIQVGRISGFGLLEMSRQRLRPGMLEITTQPCNHCHGTGLIRSDNSLALSIVRALEEE 698

Query: 432 NRAYDADKFVVYASPAVADTLQGEESHALAELEVFIGKEVRIQA 475
                  + +V A   V + L  E+   +A +E   G  VR++A
Sbjct: 699 GMRRRVREVLVKAPVNVINYLFNEKREHIALIEGRYGLSVRLEA 742



 Score = 61.2 bits (147), Expect = 2e-13
 Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 1/76 (1%)

Query: 1  MSAELLLNVTPSE-TRVAMIEGGILQEIHIEREAKRGIVGNIYKGKVSRVLPGMQAAFVD 59
          M+ ++L++ T +E TRV +++G  ++E   E   KR + GNIY  KV+RV P +QAAFVD
Sbjct: 1  MAKKMLIDATHAEETRVVVVDGTKVEEFDFESVNKRQLAGNIYLAKVTRVEPSLQAAFVD 60

Query: 60 IGLDKAAFLHASDIVP 75
           G ++  FL  S+I P
Sbjct: 61 YGGNRHGFLAFSEIHP 76